Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O1A01_RS04895 Genome accession   NZ_CP115153
Coordinates   972880..973833 (+) Length   317 a.a.
NCBI ID   WP_270065706.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 967880..978833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS04880 (O1A01_04880) - 968205..969047 (-) 843 WP_270065704.1 patatin family protein -
  O1A01_RS04885 (O1A01_04885) pepF 969355..971169 (+) 1815 WP_270065705.1 oligoendopeptidase F -
  O1A01_RS04890 (O1A01_04890) - 971380..972507 (+) 1128 WP_235858245.1 histidine kinase N-terminal domain-containing protein -
  O1A01_RS04895 (O1A01_04895) ceuB 972880..973833 (+) 954 WP_270065706.1 ABC transporter permease Machinery gene
  O1A01_RS04900 (O1A01_04900) - 973823..974770 (+) 948 WP_066419927.1 iron chelate uptake ABC transporter family permease subunit -
  O1A01_RS04905 (O1A01_04905) - 974767..975525 (+) 759 WP_270065707.1 ABC transporter ATP-binding protein -
  O1A01_RS04910 (O1A01_04910) - 975631..976578 (+) 948 WP_066419932.1 siderophore ABC transporter substrate-binding protein -
  O1A01_RS04915 (O1A01_04915) - 976787..978055 (+) 1269 WP_270065708.1 hemolysin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35355.88 Da        Isoelectric Point: 10.0869

>NTDB_id=768333 O1A01_RS04895 WP_270065706.1 972880..973833(+) (ceuB) [Sutcliffiella sp. NC1]
MKRRYLIILLIILSIISLFIGVKNITPLDLIYWRDDEVQIFLISRVPRLVSIIIAGVSLSICGLIMQQLTRNKFVSPTTA
GTMDSARLGVLVSLMLFTSASMFQKMIVAFIFALLGTFIFMKILEKVKYKDAIFIPLVGLMFGNIIGSITTFFAYKNDLI
QNMSSWLQGNFSLIMQGRYELLYISIPLMAIAYLYANRFTVAGMGEEFAVNLGMNYKRVVNIGLIIVALVATLVLLTVGM
IPFLGLIVPNIVSLYQGDNLKKNLSHTALIGAIFVLVCDILGRTIIYPYEIPIGLTVGVIGSGMFLYLLMRRKNYAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=768333 O1A01_RS04895 WP_270065706.1 972880..973833(+) (ceuB) [Sutcliffiella sp. NC1]
ATGAAAAGAAGGTATTTAATAATCTTACTAATAATTTTATCCATTATCTCCTTATTTATCGGAGTGAAAAACATTACACC
ACTTGACTTAATTTATTGGAGAGATGATGAAGTACAAATTTTTCTAATAAGTCGAGTACCACGGTTAGTAAGTATTATTA
TTGCCGGTGTTTCTTTAAGTATTTGTGGTTTAATCATGCAACAATTAACTAGAAACAAGTTTGTTTCTCCTACTACTGCT
GGAACGATGGACTCTGCGCGTTTAGGTGTTCTAGTTTCGTTAATGTTATTTACATCTGCAAGCATGTTCCAAAAAATGAT
TGTTGCGTTTATTTTTGCTTTACTAGGAACCTTCATTTTTATGAAAATATTAGAAAAAGTTAAGTATAAAGATGCCATTT
TTATTCCGTTAGTAGGTTTAATGTTTGGTAATATTATAGGTTCCATAACTACTTTCTTTGCGTACAAGAACGATTTAATT
CAGAATATGTCTTCATGGCTACAAGGTAATTTTTCGTTAATTATGCAAGGAAGGTACGAATTACTCTATATAAGTATTCC
TTTAATGGCTATCGCCTATCTTTATGCTAACCGATTTACGGTAGCTGGGATGGGAGAGGAATTCGCAGTTAACCTAGGAA
TGAATTATAAACGAGTAGTTAATATCGGATTAATTATTGTAGCGTTAGTAGCTACATTGGTATTGTTAACAGTCGGTATG
ATACCGTTTTTAGGATTAATTGTTCCTAATATCGTAAGTTTATATCAAGGAGACAACTTAAAGAAAAACCTATCTCATAC
TGCCCTAATTGGTGCAATCTTCGTATTAGTATGTGACATTCTTGGTAGAACGATTATTTACCCGTATGAAATCCCTATCG
GTTTAACAGTAGGTGTTATAGGAAGCGGAATGTTCCTGTACCTATTAATGAGGAGAAAGAATTATGCAGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.38

99.685

0.552