Detailed information NTG0768314

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QPX68_RS10010
• Genome accession: NZ_CP126696
• Coordinates: 2096002..2097138 (+)
• Length: 378 a.a.
• NCBI ID: WP_032873352.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GZY63
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2091002..2102138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX68_RS09975	-	2092411..2092836 (+)	426	WP_032873355.1	SDR family NAD(P)-dependent oxidoreductase	-
QPX68_RS09980	sprB	2092870..2093046 (-)	177	WP_007612049.1	recombination directionality factor SprB	-
QPX68_RS09985	-	2093049..2093221 (-)	173	Protein_1918	hypothetical protein	-
QPX68_RS09990	-	2093409..2093765 (-)	357	WP_032873513.1	DUF3221 domain-containing protein	-
QPX68_RS09995	-	2094214..2094450 (+)	237	WP_007407922.1	hypothetical protein	-
QPX68_RS10000	-	2094576..2094950 (+)	375	WP_007407921.1	YoqO family protein	-
QPX68_RS10005	-	2095182..2095633 (-)	452	Protein_1922	hypothetical protein	-
QPX68_RS10010	rapF	2096002..2097138 (+)	1137	WP_032873352.1	Rap family tetratricopeptide repeat protein	Regulator
QPX68_RS10015	-	2097128..2097310 (+)	183	WP_003153655.1	hypothetical protein	-
QPX68_RS10020	-	2097619..2098638 (+)	1020	WP_032873350.1	hypothetical protein	-
QPX68_RS10025	-	2098699..2099058 (-)	360	WP_032873347.1	hypothetical protein	-
QPX68_RS10030	-	2099470..2099553 (+)	84	WP_119834764.1	putative holin-like toxin	-
QPX68_RS10035	-	2099808..2100266 (-)	459	WP_032873346.1	SMI1/KNR4 family protein	-
QPX68_RS10040	-	2100282..2102084 (-)	1803	WP_032873344.1	T7SS effector LXG polymorphic toxin	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44658.20 Da
• Isoelectric Point: 4.7141

>NTDB_id=768314 QPX68_RS10010 WP_032873352.1 2096002..2097138(+) (rapF) [Bacillus amyloliquefaciens strain GZY63]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKEEVKQEIELMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQTNSLHNSSRLLDILLMLAKTHFKLSNTVDGKQVCEQGLMLSKDLNDDVLEKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=768314 QPX68_RS10010 WP_032873352.1 2096002..2097138(+) (rapF) [Bacillus amyloliquefaciens strain GZY63]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGGTTATTCAGTGTTGC
AGATGCAGAAATCTTGAAGGAAGAAGTGAAGCAAGAAATAGAGCTTATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCACACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAACTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTTTAAT
GCTGGCAAAAACGCACTTTAAGTTGTCCAACACAGTTGATGGAAAACAAGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
ATTTGAACGATGACGTATTAGAGAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (222-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	45.932	100	0.463
rapC	Bacillus subtilis subsp. subtilis str. 168	45.503	100	0.455