Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LPH28_RS05180 Genome accession   NZ_AP025209
Coordinates   1078836..1079351 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017.06.04CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073836..1084351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH28_RS05135 (VEGS18_A10070) csrA 1074423..1074608 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  LPH28_RS05165 (VEGS18_A10080) yqaB 1076066..1076632 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  LPH28_RS05170 (VEGS18_A10090) yqaA 1076629..1077057 (+) 429 WP_001287454.1 YqaA family protein -
  LPH28_RS05175 (VEGS18_A10100) gshA 1077130..1078686 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  LPH28_RS05180 (VEGS18_A10110) luxS 1078836..1079351 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  LPH28_RS05185 (VEGS18_A10120) emrB 1079415..1080953 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  LPH28_RS05190 (VEGS18_A10130) emrA 1080970..1082142 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  LPH28_RS05195 (VEGS18_A10140) emrR 1082269..1082799 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  LPH28_RS05200 (VEGS18_A10150) ygaH 1082890..1083225 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  LPH28_RS05205 (VEGS18_A10160) ygaZ 1083215..1083952 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=76831 LPH28_RS05180 WP_001130211.1 1078836..1079351(+) (luxS) [Escherichia coli strain 2017.06.04CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=76831 LPH28_RS05180 WP_001130211.1 1078836..1079351(+) (luxS) [Escherichia coli strain 2017.06.04CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment