Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   QPX68_RS08585 Genome accession   NZ_CP126696
Coordinates   1706548..1708422 (+) Length   624 a.a.
NCBI ID   WP_032874953.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701548..1713422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS08570 ymcA 1702599..1703030 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  QPX68_RS08575 cotE 1703283..1703828 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  QPX68_RS08580 hexA 1703947..1706532 (+) 2586 WP_032875230.1 DNA mismatch repair protein MutS Machinery gene
  QPX68_RS08585 hexB 1706548..1708422 (+) 1875 WP_032874953.1 DNA mismatch repair endonuclease MutL Machinery gene
  QPX68_RS08590 - 1708821..1709030 (-) 210 WP_032874955.1 hypothetical protein -
  QPX68_RS08595 - 1709960..1710637 (+) 678 WP_032874957.1 MBL fold metallo-hydrolase -
  QPX68_RS08600 fabD 1710952..1711821 (+) 870 WP_032874959.1 ACP S-malonyltransferase -
  QPX68_RS08605 - 1711958..1712932 (+) 975 WP_032874961.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70151.47 Da        Isoelectric Point: 6.0949

>NTDB_id=768308 QPX68_RS08585 WP_032874953.1 1706548..1708422(+) (hexB) [Bacillus amyloliquefaciens strain GZY63]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSKVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPLIIEEEILPNEADH
GVPPELGMPETAAPVSDIPEPEAVSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=768308 QPX68_RS08585 WP_032874953.1 1706548..1708422(+) (hexB) [Bacillus amyloliquefaciens strain GZY63]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCAAAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACCCTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGGTTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGTCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TTGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTTGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGCTAATAATAGAAGAAGAAATCCTCCCGAATGAAGCGGATCAC
GGAGTGCCGCCGGAGCTCGGTATGCCCGAAACGGCAGCGCCTGTTTCAGATATTCCGGAACCGGAAGCTGTCTCTGAAGA
AATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTCGAG
CCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTACGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCTGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGGCATTTGCGCAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.594

100

0.482