Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QPX68_RS08225 Genome accession   NZ_CP126696
Coordinates   1628610..1628972 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623610..1633972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS08195 flgD 1624495..1624935 (+) 441 WP_007409782.1 flagellar hook assembly protein FlgD -
  QPX68_RS08200 flgG 1624960..1625736 (+) 777 WP_007409783.1 flagellar basal body rod protein FlgG -
  QPX68_RS08205 - 1625776..1625991 (+) 216 WP_003154243.1 flagellar FlbD family protein -
  QPX68_RS08210 fliL 1625988..1626407 (+) 420 WP_032874897.1 flagellar basal body-associated protein FliL -
  QPX68_RS08215 fliM 1626441..1627439 (+) 999 WP_003154240.1 flagellar motor switch protein FliM -
  QPX68_RS08220 fliY 1627429..1628583 (+) 1155 WP_032874899.1 flagellar motor switch phosphatase FliY -
  QPX68_RS08225 pilH 1628610..1628972 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  QPX68_RS08230 fliZ 1628987..1629640 (+) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  QPX68_RS08235 fliP 1629633..1630298 (+) 666 WP_012117556.1 flagellar type III secretion system pore protein FliP -
  QPX68_RS08240 fliQ 1630313..1630582 (+) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  QPX68_RS08245 fliR 1630589..1631368 (+) 780 WP_032874901.1 flagellar biosynthetic protein FliR -
  QPX68_RS08250 flhB 1631368..1632447 (+) 1080 WP_007409787.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=768302 QPX68_RS08225 WP_003154238.1 1628610..1628972(+) (pilH) [Bacillus amyloliquefaciens strain GZY63]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=768302 QPX68_RS08225 WP_003154238.1 1628610..1628972(+) (pilH) [Bacillus amyloliquefaciens strain GZY63]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAAGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTAGTGACAATGG
ATATTACAATGCCTGAAATGGATGGGATTACAGCTTTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGTCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCTATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383