Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QPX68_RS06215 Genome accession   NZ_CP126696
Coordinates   1197450..1198115 (+) Length   221 a.a.
NCBI ID   WP_032871259.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192450..1203115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS06190 - 1192788..1194146 (+) 1359 WP_032874552.1 HAMP domain-containing sensor histidine kinase -
  QPX68_RS06195 - 1194266..1195201 (+) 936 WP_065465011.1 ATP-binding cassette domain-containing protein -
  QPX68_RS06200 - 1195182..1195913 (+) 732 WP_032874554.1 ABC transporter permease -
  QPX68_RS06205 - 1195931..1196122 (+) 192 WP_003154894.1 hypothetical protein -
  QPX68_RS06210 - 1196188..1197438 (+) 1251 WP_032874556.1 ATP-binding protein -
  QPX68_RS06215 comA 1197450..1198115 (+) 666 WP_032871259.1 response regulator transcription factor Regulator
  QPX68_RS06220 - 1198308..1198490 (+) 183 WP_032874558.1 plantaricin C family lantibiotic -
  QPX68_RS06225 - 1198577..1201759 (+) 3183 WP_032874560.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25144.33 Da        Isoelectric Point: 6.2410

>NTDB_id=768284 QPX68_RS06215 WP_032871259.1 1197450..1198115(+) (comA) [Bacillus amyloliquefaciens strain GZY63]
MIKILLIDDHIGVAQGTKAILEKSNKMGVTILSCCKEVLNHLKHYEYDLLLLDLYMPELNGMELSKMILRESPDQKIIIY
TGFDISVHFNLLVEVGVSGFISKSSTEEHMIKVIESVIEGDTIIPTHLFKQLRRTEANTFNIDKLEDRIRDITLNEREQD
ILAGVAEGMTNRELSAKLLISQRAVEYILTGVYNKLGVKSRTEALIKANRYSLISMKTIYE

Nucleotide


Download         Length: 666 bp        

>NTDB_id=768284 QPX68_RS06215 WP_032871259.1 1197450..1198115(+) (comA) [Bacillus amyloliquefaciens strain GZY63]
ATGATAAAGATTTTATTAATTGATGATCATATTGGTGTTGCTCAAGGGACAAAAGCCATTCTTGAAAAAAGCAATAAAAT
GGGAGTAACAATATTGTCTTGCTGTAAAGAAGTACTTAATCACCTTAAGCATTACGAGTATGACTTACTTTTACTTGATT
TATATATGCCGGAGTTAAATGGAATGGAATTGTCAAAAATGATTCTTAGAGAGAGTCCCGATCAAAAAATTATAATTTAT
ACTGGTTTTGATATCTCTGTCCATTTCAATCTTTTGGTTGAAGTTGGTGTTTCCGGGTTCATAAGTAAGTCTTCAACAGA
AGAGCATATGATAAAAGTAATCGAAAGTGTCATTGAGGGAGATACCATTATTCCTACTCATCTCTTTAAACAATTAAGAA
GAACAGAAGCAAATACGTTCAACATTGATAAGCTTGAAGATAGAATAAGAGATATTACTTTAAATGAAAGAGAACAAGAT
ATCTTAGCGGGCGTAGCGGAGGGAATGACAAACCGGGAATTATCAGCAAAGCTGTTGATCAGTCAAAGAGCGGTTGAATA
CATTCTTACTGGTGTGTACAACAAGCTCGGAGTAAAATCCAGAACAGAGGCGCTGATCAAAGCAAATCGATATTCATTAA
TTTCTATGAAAACTATATATGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

40.758

95.475

0.389