Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O9240_RS17920 Genome accession   NZ_CP115129
Coordinates   3575160..3575774 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 2021CK-01443     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3564194..3586894 3575160..3575774 within 0


Gene organization within MGE regions


Location: 3564194..3586894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9240_RS17860 (O9240_17850) - 3565017..3565202 (-) 186 WP_326971271.1 hypothetical protein -
  O9240_RS17865 (O9240_17855) yccA 3565474..3566133 (+) 660 WP_003035917.1 FtsH protease modulator YccA -
  O9240_RS17870 (O9240_17860) tusE 3566222..3566551 (+) 330 WP_003035914.1 sulfurtransferase TusE -
  O9240_RS17875 (O9240_17865) yccX 3566548..3566829 (-) 282 WP_003836833.1 acylphosphatase -
  O9240_RS17880 (O9240_17870) rlmI 3566924..3568114 (+) 1191 WP_071687937.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  O9240_RS17885 (O9240_17875) hspQ 3568172..3568489 (+) 318 WP_003035905.1 heat shock protein HspQ -
  O9240_RS17890 (O9240_17880) - 3568551..3568964 (-) 414 WP_003035903.1 CoA-binding protein -
  O9240_RS17895 (O9240_17885) csgI 3569137..3569799 (+) 663 WP_003836835.1 curli synthesis inhibitor -
  O9240_RS17900 (O9240_17890) mgsA 3569893..3570351 (+) 459 WP_003035897.1 methylglyoxal synthase -
  O9240_RS17905 (O9240_17895) helD 3570384..3572438 (-) 2055 WP_016149881.1 DNA helicase IV -
  O9240_RS17910 (O9240_17900) - 3572564..3573010 (+) 447 WP_003035892.1 YccF domain-containing protein -
  O9240_RS17915 (O9240_17905) yccS 3573029..3575182 (+) 2154 WP_032941200.1 YccS family putative transporter -
  O9240_RS17920 (O9240_17910) sxy/tfoX 3575160..3575774 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  O9240_RS17925 (O9240_17915) sulA 3575992..3576501 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  O9240_RS17930 (O9240_17920) ompA 3576859..3577905 (+) 1047 WP_003035883.1 porin OmpA -
  O9240_RS17935 (O9240_17925) matP 3577997..3578449 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  O9240_RS17940 (O9240_17930) - 3578635..3580395 (+) 1761 WP_003035878.1 AAA family ATPase -
  O9240_RS17945 (O9240_17935) fabA 3580464..3580982 (+) 519 WP_003035875.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  O9240_RS17950 (O9240_17940) rmf 3581090..3581257 (-) 168 WP_003035871.1 ribosome modulation factor -
  O9240_RS17955 (O9240_17945) pqiC 3581514..3582077 (-) 564 WP_032936292.1 membrane integrity-associated transporter subunit PqiC -
  O9240_RS17960 (O9240_17950) pqiB 3582074..3583714 (-) 1641 WP_003836843.1 intermembrane transport protein PqiB -
  O9240_RS17965 (O9240_17955) pqiA 3583719..3584972 (-) 1254 WP_003035862.1 membrane integrity-associated transporter subunit PqiA -
  O9240_RS17970 (O9240_17960) - 3584987..3586894 (-) 1908 WP_003836846.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=768280 O9240_RS17920 WP_003035889.1 3575160..3575774(-) (sxy/tfoX) [Citrobacter freundii strain 2021CK-01443]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=768280 O9240_RS17920 WP_003035889.1 3575160..3575774(-) (sxy/tfoX) [Citrobacter freundii strain 2021CK-01443]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCTGTAGGGGGGATACATGAAGCCGCACTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686