Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QPX68_RS05110 Genome accession   NZ_CP126696
Coordinates   988264..989007 (+) Length   247 a.a.
NCBI ID   WP_032874336.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 983264..994007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS05075 - 983630..983971 (+) 342 WP_003155243.1 YhaI family protein -
  QPX68_RS05080 - 983968..984579 (-) 612 WP_007610395.1 HTH-type transcriptional regulator Hpr -
  QPX68_RS05085 - 984759..985115 (-) 357 WP_007409224.1 YtxH domain-containing protein -
  QPX68_RS05090 - 985233..985424 (+) 192 WP_007409223.1 hypothetical protein -
  QPX68_RS05095 - 985482..986000 (-) 519 WP_012117208.1 tryptophan transporter -
  QPX68_RS05100 serC 986121..987200 (-) 1080 WP_032874334.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  QPX68_RS05105 - 987336..987773 (-) 438 WP_007409220.1 HIT family protein -
  QPX68_RS05110 pptA 988264..989007 (+) 744 WP_032874336.1 ABC transporter ATP-binding protein Regulator
  QPX68_RS05115 - 989000..990226 (+) 1227 WP_032874339.1 ABC transporter permease -
  QPX68_RS05120 - 990269..990973 (+) 705 WP_032874340.1 EcsC family protein -
  QPX68_RS05125 - 990996..992183 (-) 1188 WP_032874343.1 M20 family metallopeptidase -
  QPX68_RS05130 - 992252..993637 (-) 1386 WP_032874345.1 membrane protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27709.08 Da        Isoelectric Point: 5.4047

>NTDB_id=768267 QPX68_RS05110 WP_032874336.1 988264..989007(+) (pptA) [Bacillus amyloliquefaciens strain GZY63]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGAIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMEDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=768267 QPX68_RS05110 WP_032874336.1 988264..989007(+) (pptA) [Bacillus amyloliquefaciens strain GZY63]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGATTAATGG
ACCCGCATAAAGGCGCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGCTCGCAATTTACGTAC
ATCCCAGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATCTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTCTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAGCAGAAAGTCATGATCATGTGCGCGTTTCTCGCGGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTTGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACGCATATCCTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGGAAGACGCAGCTCTTGATGACTTGTATATTGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547