Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   O2609_RS07490 Genome accession   NZ_CP115046
Coordinates   1561543..1561989 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 25923 WZlab     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556543..1566989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2609_RS07460 (O2609_07470) gcvPA 1557469..1558815 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  O2609_RS07465 (O2609_07475) gcvT 1558835..1559926 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  O2609_RS07470 (O2609_07480) - 1560085..1560609 (-) 525 WP_001015120.1 shikimate kinase -
  O2609_RS07475 (O2609_07485) - 1560599..1560745 (-) 147 WP_001792109.1 hypothetical protein -
  O2609_RS07480 (O2609_07490) comGF 1560842..1561339 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  O2609_RS07485 (O2609_07495) comGE 1561257..1561556 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  O2609_RS07490 (O2609_07500) comGD 1561543..1561989 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  O2609_RS07495 (O2609_07505) comGC 1561967..1562278 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  O2609_RS07500 (O2609_07510) comGB 1562292..1563362 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  O2609_RS07505 (O2609_07515) comGA 1563334..1564308 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  O2609_RS07510 (O2609_07520) - 1564360..1564983 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  O2609_RS07515 (O2609_07525) - 1564980..1565309 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  O2609_RS07520 (O2609_07530) - 1565309..1566295 (-) 987 WP_000161314.1 ROK family glucokinase -
  O2609_RS07525 (O2609_07535) - 1566292..1566495 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=768243 O2609_RS07490 WP_001788899.1 1561543..1561989(-) (comGD) [Staphylococcus aureus strain ATCC 25923 WZlab]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=768243 O2609_RS07490 WP_001788899.1 1561543..1561989(-) (comGD) [Staphylococcus aureus strain ATCC 25923 WZlab]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1