Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QPX68_RS01165 Genome accession   NZ_CP126696
Coordinates   203941..204624 (+) Length   227 a.a.
NCBI ID   WP_007609089.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 198941..209624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS01145 glmS 199614..201416 (+) 1803 WP_032872648.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  QPX68_RS01150 - 201798..202670 (+) 873 WP_029326108.1 ABC transporter ATP-binding protein -
  QPX68_RS01155 - 202648..203301 (+) 654 WP_032872650.1 ABC-2 transporter permease -
  QPX68_RS01160 - 203419..203680 (-) 262 Protein_186 hypothetical protein -
  QPX68_RS01165 braR 203941..204624 (+) 684 WP_007609089.1 response regulator transcription factor Regulator
  QPX68_RS01170 - 204621..205643 (+) 1023 WP_032872652.1 sensor histidine kinase -
  QPX68_RS01175 - 206464..207228 (+) 765 WP_007408973.1 ABC transporter ATP-binding protein -
  QPX68_RS01180 - 207215..209143 (+) 1929 WP_032872654.1 FtsX-like permease family protein -
  QPX68_RS01185 - 209195..209479 (+) 285 WP_032872656.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26478.49 Da        Isoelectric Point: 4.8517

>NTDB_id=768239 QPX68_RS01165 WP_007609089.1 203941..204624(+) (braR) [Bacillus amyloliquefaciens strain GZY63]
MDNIYKLLIIEDDKDMAKALQNLLVKWNFETVICGDFDNILSIYEKEEPHIILLDINIPSFDGFYWCKKIREVSSVPIIF
CSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAESHLIESNNVILNLNDAKIYFQDQSLELTKNE
FKILKTLMENKGKVVSRDNLMRQLWNDDIYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYIIQ

Nucleotide


Download         Length: 684 bp        

>NTDB_id=768239 QPX68_RS01165 WP_007609089.1 203941..204624(+) (braR) [Bacillus amyloliquefaciens strain GZY63]
TTGGATAATATATATAAATTGCTGATTATAGAAGACGATAAGGATATGGCTAAGGCGTTACAAAATTTACTTGTTAAATG
GAATTTTGAAACTGTTATATGCGGAGATTTTGATAATATTTTGTCAATATATGAAAAAGAAGAGCCTCACATCATATTAT
TGGACATCAATATTCCTTCATTTGATGGTTTTTATTGGTGTAAGAAAATAAGAGAAGTTTCAAGTGTCCCAATTATTTTT
TGCTCGTCTAGAAACAGTAATATGGATATTGTCATGGCTATTAACAATGGCGGGGATGATTATATTCAAAAACCATTTGA
CAGCCATGTATTGGTGGCGAAATTACAAGCAATTATAAGGAGAACTTATGAGTACATAACAGCAGAATCTCATCTAATCG
AATCTAATAATGTGATATTAAACCTTAACGATGCAAAAATATACTTCCAAGATCAGAGTTTAGAGCTTACAAAGAATGAA
TTTAAAATTCTAAAAACGTTAATGGAAAACAAAGGGAAAGTTGTTTCGCGGGATAATTTAATGAGACAGCTTTGGAATGA
TGATATTTACGTAAACGAAAATACGTTGACAGTAAATATAAATAGATTAAGGAATAGATTAGAGGGGATTAATGTTGATG
ACTTTATTTTAACAAAAAAAGGAATGGGATATATAATTCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.119

96.476

0.445