Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LLE01_RS11700 Genome accession   NZ_CP126675
Coordinates   2121676..2122446 (-) Length   256 a.a.
NCBI ID   WP_260307421.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain E.0.1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2116676..2127446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE01_RS11670 (LLE01_11640) - 2117307..2117474 (-) 168 WP_004254670.1 hypothetical protein -
  LLE01_RS11675 (LLE01_11645) - 2117611..2118534 (-) 924 WP_004254664.1 peptidase U32 family protein -
  LLE01_RS11680 (LLE01_11650) - 2118755..2119036 (+) 282 WP_004254660.1 DUF3270 domain-containing protein -
  LLE01_RS11685 (LLE01_11655) - 2119059..2119880 (-) 822 WP_004254659.1 putative RNA methyltransferase -
  LLE01_RS11690 (LLE01_11660) - 2119998..2120624 (+) 627 WP_010906254.1 copper homeostasis protein CutC -
  LLE01_RS11695 (LLE01_11665) - 2120664..2121683 (-) 1020 WP_010906255.1 ABC transporter permease -
  LLE01_RS11700 (LLE01_11670) pptA 2121676..2122446 (-) 771 WP_260307421.1 ABC transporter ATP-binding protein Regulator
  LLE01_RS11705 (LLE01_11675) - 2122465..2124270 (-) 1806 WP_004254653.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  LLE01_RS11710 (LLE01_11680) - 2124549..2124950 (+) 402 WP_004254651.1 HIT family protein -
  LLE01_RS11715 (LLE01_11685) - 2124963..2125184 (+) 222 WP_010906257.1 hypothetical protein -
  LLE01_RS11720 (LLE01_11690) - 2125196..2125540 (-) 345 WP_004254648.1 hypothetical protein -
  LLE01_RS11725 (LLE01_11695) rplA 2125619..2126308 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  LLE01_RS11730 (LLE01_11700) rplK 2126604..2127029 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28503.07 Da        Isoelectric Point: 4.5320

>NTDB_id=768103 LLE01_RS11700 WP_260307421.1 2121676..2122446(-) (pptA) [Lactococcus lactis subsp. lactis strain E.0.1]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSMTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=768103 LLE01_RS11700 WP_260307421.1 2121676..2122446(-) (pptA) [Lactococcus lactis subsp. lactis strain E.0.1]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
AGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGATGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

66.942

94.531

0.633
  pptA Streptococcus thermophilus LMD-9

66.529

94.531

0.629