Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OZ430_RS16615 Genome accession   NZ_CP115039
Coordinates   3542543..3543094 (+) Length   183 a.a.
NCBI ID   WP_003302169.1    Uniprot ID   A0A3R8U6I6
Organism   Stutzerimonas kunmingensis strain LP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537543..3548094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ430_RS16590 (OZ430_16600) speA 3537570..3539483 (-) 1914 WP_312915348.1 arginine decarboxylase -
  OZ430_RS16595 (OZ430_16605) - 3539606..3539977 (-) 372 WP_312915345.1 translation initiation factor Sui1 -
  OZ430_RS16600 (OZ430_16610) thiO 3540126..3541235 (-) 1110 WP_312915342.1 glycine oxidase ThiO -
  OZ430_RS16605 (OZ430_16615) - 3541388..3541885 (+) 498 WP_003302173.1 GspH/FimT family pseudopilin -
  OZ430_RS16610 (OZ430_16620) - 3542043..3542534 (+) 492 WP_003302171.1 GspH/FimT family pseudopilin -
  OZ430_RS16615 (OZ430_16625) pilV 3542543..3543094 (+) 552 WP_003302169.1 type IV pilus modification protein PilV Machinery gene
  OZ430_RS16620 (OZ430_16630) - 3543091..3543942 (+) 852 WP_312915339.1 PilW family protein -
  OZ430_RS16625 (OZ430_16635) - 3543939..3544544 (+) 606 WP_179484770.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.5302

>NTDB_id=768014 OZ430_RS16615 WP_003302169.1 3542543..3543094(+) (pilV) [Stutzerimonas kunmingensis strain LP1]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAIVLAGDLIEIVRAHPKELFDTSPPQFPMNSGLKD
SSIFYKAAGDEFADRESCVASPTRIAKTAKELRDCWADKVEALLPGGSELFVSDVYVCRSSIAGDCDDKGSMLEIRLAWQ
VREGACLDAENSDVCSYTVRVEP

Nucleotide


Download         Length: 552 bp        

>NTDB_id=768014 OZ430_RS16615 WP_003302169.1 3542543..3543094(+) (pilV) [Stutzerimonas kunmingensis strain LP1]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAGGTACTGGTGGCCCTACTGCTAACCACCATCGGTGTACTCGGCATGGT
GGCTCTGCAGGGACGCAGCATCCAATACACACAGGACTCGGTACAGCGCAACACGGCCATCGTTCTGGCCGGCGACTTGA
TCGAAATTGTAAGAGCGCACCCAAAAGAGCTGTTCGATACTTCGCCACCGCAGTTCCCTATGAACAGCGGGTTAAAAGAC
AGCTCCATTTTCTACAAAGCCGCCGGCGATGAGTTCGCCGACCGCGAGAGCTGCGTGGCGAGTCCGACCCGAATAGCAAA
AACAGCAAAAGAACTGCGCGACTGCTGGGCCGACAAGGTTGAAGCATTGTTACCAGGCGGCAGCGAGCTATTCGTTAGCG
ACGTATACGTTTGCCGCAGCTCTATTGCAGGTGATTGCGATGACAAGGGTTCAATGCTTGAAATTCGCCTGGCCTGGCAA
GTTCGTGAAGGCGCCTGCCTTGATGCGGAAAACTCCGATGTTTGCAGCTATACAGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8U6I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50.82

100

0.508