Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IB214_RS16155 Genome accession   NZ_CP115035
Coordinates   3313488..3314102 (-) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter sp. C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3308488..3319102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB214_RS16140 (IB214_16145) helD 3308712..3310766 (-) 2055 WP_117341735.1 DNA helicase IV -
  IB214_RS16145 (IB214_16150) - 3310892..3311338 (+) 447 WP_096757638.1 YccF domain-containing protein -
  IB214_RS16150 (IB214_16155) yccS 3311357..3313510 (+) 2154 WP_117341965.1 YccS family putative transporter -
  IB214_RS16155 (IB214_16160) sxy/tfoX 3313488..3314102 (-) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  IB214_RS16160 (IB214_16165) sulA 3314319..3314828 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  IB214_RS16165 (IB214_16170) ompA 3315184..3316242 (+) 1059 WP_117341964.1 porin OmpA -
  IB214_RS16170 (IB214_16175) matP 3316341..3316793 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  IB214_RS16175 (IB214_16180) - 3316979..3318739 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=767982 IB214_RS16155 WP_117341734.1 3313488..3314102(-) (sxy/tfoX) [Citrobacter sp. C1]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=767982 IB214_RS16155 WP_117341734.1 3313488..3314102(-) (sxy/tfoX) [Citrobacter sp. C1]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCCTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696