Detailed information NTG0076797

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LPH27_RS20710
• Genome accession: NZ_AP025205
• Coordinates: 4327035..4328060 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.04.03CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4322035..4333060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPH27_RS20690 (VEGS17_A40280)	metJ	4323096..4323413 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LPH27_RS20695 (VEGS17_A40290)	yiiX	4323597..4324205 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LPH27_RS20700 (VEGS17_A40300)	rpmE	4324266..4324478 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LPH27_RS20705 (VEGS17_A40310)	priA	4324681..4326879 (+)	2199	WP_229266197.1	primosomal protein N'	Machinery gene
LPH27_RS20710 (VEGS17_A40320)	cytR	4327035..4328060 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LPH27_RS20715 (VEGS17_A40330)	ftsN	4328152..4329111 (+)	960	WP_000068828.1	cell division protein FtsN	-
LPH27_RS20720 (VEGS17_A40340)	hslV	4329204..4329734 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LPH27_RS20725 (VEGS17_A40350)	hslU	4329744..4331075 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LPH27_RS20730 (VEGS17_A40360)	menA	4331142..4332068 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LPH27_RS20735 (VEGS17_A40370)	rraA	4332161..4332646 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LPH27_RS20740 (VEGS17_A40380)	zapB	4332731..4332976 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=76797 LPH27_RS20710 WP_000644904.1 4327035..4328060(+) (cytR) [Escherichia coli strain 2017.04.03CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=76797 LPH27_RS20710 WP_000644904.1 4327035..4328060(+) (cytR) [Escherichia coli strain 2017.04.03CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628