Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ICA20_RS15665 Genome accession   NZ_CP115032
Coordinates   3179623..3180237 (-) Length   204 a.a.
NCBI ID   WP_038639434.1    Uniprot ID   -
Organism   Citrobacter sp. C5_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174623..3185237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICA20_RS15650 (ICA20_015655) helD 3174847..3176901 (-) 2055 WP_038639439.1 DNA helicase IV -
  ICA20_RS15655 (ICA20_015660) - 3177027..3177473 (+) 447 WP_038639436.1 YccF domain-containing protein -
  ICA20_RS15660 (ICA20_015665) yccS 3177492..3179645 (+) 2154 WP_038643097.1 YccS family putative transporter -
  ICA20_RS15665 (ICA20_015670) sxy/tfoX 3179623..3180237 (-) 615 WP_038639434.1 TfoX/Sxy family DNA transformation protein Regulator
  ICA20_RS15670 (ICA20_015675) sulA 3180454..3180963 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  ICA20_RS15675 (ICA20_015680) ompA 3181321..3182379 (+) 1059 WP_038639429.1 porin OmpA -
  ICA20_RS15680 (ICA20_015685) matP 3182478..3182930 (-) 453 WP_038639426.1 macrodomain Ter protein MatP -
  ICA20_RS15685 (ICA20_015690) - 3183116..3184876 (+) 1761 WP_038639423.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23240.74 Da        Isoelectric Point: 8.9204

>NTDB_id=767961 ICA20_RS15665 WP_038639434.1 3179623..3180237(-) (sxy/tfoX) [Citrobacter sp. C5_2]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVSGMHEAALPAVRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=767961 ICA20_RS15665 WP_038639434.1 3179623..3180237(-) (sxy/tfoX) [Citrobacter sp. C5_2]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGTTACAGTCTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAACGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGTAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGGATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAACAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGTGCGGTCAGTGGCATGCATGAAGCTGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686