Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IB196_RS14415 Genome accession   NZ_CP115031
Coordinates   2962681..2963295 (-) Length   204 a.a.
NCBI ID   WP_005123517.1    Uniprot ID   A0A6N6K490
Organism   Citrobacter sp. C6_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957681..2968295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB196_RS14400 (IB196_014400) helD 2957905..2959959 (-) 2055 WP_155020872.1 DNA helicase IV -
  IB196_RS14405 (IB196_014405) - 2960085..2960531 (+) 447 WP_005123514.1 YccF domain-containing protein -
  IB196_RS14410 (IB196_014410) yccS 2960550..2962703 (+) 2154 WP_005123516.1 YccS family putative transporter -
  IB196_RS14415 (IB196_014415) sxy/tfoX 2962681..2963295 (-) 615 WP_005123517.1 TfoX/Sxy family DNA transformation protein Regulator
  IB196_RS14420 (IB196_014420) sulA 2963512..2964021 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  IB196_RS14425 (IB196_014425) ompA 2964377..2965426 (+) 1050 WP_005123519.1 porin OmpA -
  IB196_RS14430 (IB196_014430) matP 2965525..2965977 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  IB196_RS14435 (IB196_014435) - 2966163..2967923 (+) 1761 WP_188232528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23408.16 Da        Isoelectric Point: 9.5527

>NTDB_id=767938 IB196_RS14415 WP_005123517.1 2962681..2963295(-) (sxy/tfoX) [Citrobacter sp. C6_1]
MKKLSYARIYKSQEYLESLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQIN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=767938 IB196_RS14415 WP_005123517.1 2962681..2963295(-) (sxy/tfoX) [Citrobacter sp. C6_1]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGAGTCACTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACAGTCGAGGATACGGTGTTCGCCATGGTCGCCAGTGGCGAGCTATATCTTCGGGCCTGTG
AACAGAGCGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTTCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGTGCAAAAATGTGCTGGTTGAAACTGCGACAGATTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCGATTGGGGGCATTCATGAGGCGGCGCTCCCGGCGATTCG
CCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N6K490

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.139

98.529

0.711