Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QPL68_RS02095 Genome accession   NZ_CP126629
Coordinates   395965..397644 (+) Length   559 a.a.
NCBI ID   WP_141059924.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 390965..402644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS02065 (QPL68_02065) - 391818..392180 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  QPL68_RS02070 (QPL68_02070) nusB 392240..392629 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  QPL68_RS02075 (QPL68_02075) xseA 392646..393983 (+) 1338 WP_063652138.1 exodeoxyribonuclease VII large subunit -
  QPL68_RS02080 (QPL68_02080) - 393976..394206 (+) 231 WP_063652141.1 exodeoxyribonuclease VII small subunit -
  QPL68_RS02085 (QPL68_02085) - 394184..395065 (+) 882 WP_063652145.1 polyprenyl synthetase family protein -
  QPL68_RS02090 (QPL68_02090) argR 395497..395949 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  QPL68_RS02095 (QPL68_02095) recN 395965..397644 (+) 1680 WP_141059924.1 DNA repair protein RecN Machinery gene
  QPL68_RS02100 (QPL68_02100) lpdA 397795..399216 (+) 1422 WP_259378633.1 dihydrolipoyl dehydrogenase -
  QPL68_RS02105 (QPL68_02105) - 399232..400224 (+) 993 WP_063652153.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  QPL68_RS02110 (QPL68_02110) - 400224..401207 (+) 984 WP_001096637.1 alpha-ketoacid dehydrogenase subunit beta -
  QPL68_RS02115 (QPL68_02115) - 401220..402494 (+) 1275 WP_000406850.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64249.93 Da        Isoelectric Point: 4.7939

>NTDB_id=767893 QPL68_RS02095 WP_141059924.1 395965..397644(+) (recN) [Staphylococcus aureus strain 35-42]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLV
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=767893 QPL68_RS02095 WP_141059924.1 395965..397644(+) (recN) [Staphylococcus aureus strain 35-42]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGTT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACATAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442