Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IB222_RS14700 Genome accession   NZ_CP115024
Coordinates   3051416..3052030 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter sp. C13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046416..3057030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB222_RS14685 (IB222_014670) helD 3046640..3048694 (-) 2055 WP_148362155.1 DNA helicase IV -
  IB222_RS14690 (IB222_014675) - 3048820..3049266 (+) 447 WP_003831998.1 YccF domain-containing protein -
  IB222_RS14695 (IB222_014680) yccS 3049285..3051438 (+) 2154 WP_003831997.1 YccS family putative transporter -
  IB222_RS14700 (IB222_014685) sxy/tfoX 3051416..3052030 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  IB222_RS14705 (IB222_014690) sulA 3052248..3052757 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  IB222_RS14710 (IB222_014695) ompA 3053115..3054161 (+) 1047 WP_149384719.1 porin OmpA -
  IB222_RS14715 (IB222_014700) matP 3054250..3054702 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  IB222_RS14720 (IB222_014705) - 3054888..3056648 (+) 1761 WP_149384720.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=767893 IB222_RS14700 WP_003831996.1 3051416..3052030(-) (sxy/tfoX) [Citrobacter sp. C13]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=767893 IB222_RS14700 WP_003831996.1 3051416..3052030(-) (sxy/tfoX) [Citrobacter sp. C13]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACCCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCACTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676