Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F0314_RS18235 Genome accession   NZ_CP126602
Coordinates   3692228..3692833 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain Ec1117     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3687228..3697833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0314_RS18215 (F0314_018195) aes 3687369..3688328 (+) 960 WP_069914357.1 acetyl esterase -
  F0314_RS18220 (F0314_018200) hemH 3688325..3689287 (-) 963 WP_001250120.1 ferrochelatase -
  F0314_RS18225 (F0314_018205) adk 3689419..3690063 (-) 645 WP_001345715.1 adenylate kinase -
  F0314_RS18230 (F0314_018210) htpG 3690244..3692118 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  F0314_RS18235 (F0314_018215) recR 3692228..3692833 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F0314_RS18240 (F0314_018220) ybaB 3692833..3693162 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  F0314_RS18245 (F0314_018225) dnaX 3693215..3695146 (-) 1932 WP_069914358.1 DNA polymerase III subunit gamma/tau -
  F0314_RS18250 (F0314_018230) apt 3695275..3695826 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  F0314_RS18255 (F0314_018235) ybaN 3695979..3696356 (-) 378 WP_001188905.1 DUF454 family protein -
  F0314_RS18260 (F0314_018240) priC 3696426..3696953 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  F0314_RS18265 (F0314_018245) rsmS 3696967..3697128 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  F0314_RS18270 (F0314_018250) - 3697181..3697279 (-) 99 Protein_3574 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=767762 F0314_RS18235 WP_001195025.1 3692228..3692833(-) (recR) [Escherichia coli strain Ec1117]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=767762 F0314_RS18235 WP_001195025.1 3692228..3692833(-) (recR) [Escherichia coli strain Ec1117]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443