Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   O6P33_RS06045 Genome accession   NZ_CP114976
Coordinates   1268747..1270981 (+) Length   744 a.a.
NCBI ID   WP_269819303.1    Uniprot ID   -
Organism   Denitrificimonas caeni strain CE14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263747..1275981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P33_RS06020 (O6P33_06020) ercA 1264474..1265637 (+) 1164 WP_269819299.1 alcohol dehydrogenase-like regulatory protein ErcA -
  O6P33_RS06025 (O6P33_06025) - 1265621..1267351 (+) 1731 WP_269819300.1 NahK/ErcS family hybrid sensor histidine kinase/response regulator -
  O6P33_RS06030 (O6P33_06030) - 1267613..1267912 (+) 300 WP_269819301.1 hypothetical protein -
  O6P33_RS06040 (O6P33_06040) - 1268077..1268607 (-) 531 WP_269819302.1 DUF2062 domain-containing protein -
  O6P33_RS06045 (O6P33_06045) comA 1268747..1270981 (+) 2235 WP_269819303.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O6P33_RS06050 (O6P33_06050) - 1271057..1271689 (+) 633 WP_269819304.1 MotA/TolQ/ExbB proton channel family protein -
  O6P33_RS06055 (O6P33_06055) - 1271686..1272111 (+) 426 WP_269819305.1 ExbD/TolR family protein -
  O6P33_RS06060 (O6P33_06060) lpxK 1272111..1273115 (+) 1005 WP_269819306.1 tetraacyldisaccharide 4'-kinase -
  O6P33_RS06065 (O6P33_06065) - 1273126..1273308 (+) 183 WP_269819307.1 Trm112 family protein -
  O6P33_RS06070 (O6P33_06070) kdsB 1273313..1274077 (+) 765 WP_269819308.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O6P33_RS06075 (O6P33_06075) - 1274080..1274544 (+) 465 WP_269819309.1 low molecular weight protein-tyrosine-phosphatase -
  O6P33_RS06080 (O6P33_06080) murB 1274541..1275563 (+) 1023 WP_269819310.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82312.48 Da        Isoelectric Point: 9.3189

>NTDB_id=767645 O6P33_RS06045 WP_269819303.1 1268747..1270981(+) (comA) [Denitrificimonas caeni strain CE14]
MQISIIALIVGLLSLRVMPWLPSIFWLLSGLLVALLLLRTRLHLFGFFLLGLCWACLSAQWALDDQLAAALDGRTLWITG
TVVGLPEWPVVQGQPPTVRFELDDAVSRRAQLPRRIRVSWRTPAEPVKAGQRWRLAVRLKRPDGSLNPYGFDYQAWLLAK
RIGATGSVKAGQLVAQGQGLDHWREQVRARIQRYAPEPAQGLMTALILGDGSGLSAEQWQTLQATGTVHLMVISGQHISL
IAAVAYAVVFWLMRLGWWPQRVPWLPAACVLSISAALAYGTFAGFAVPVQRACIMVMVALLWRWHFQHLSVWIAFLIALA
VVLIYEPLVVLQAGFWLSFTAVGALILAFAARLGPWRWWHMVGRTQWVAAIGLAPFLLALSLPVSLMGPLANIFAVPWLS
LLALPLTLLGALLLPWPSLASWVLSAAAWCLTAMFAGLDWFAQGWPVWQGSGVTVAALLLAVLGVLCWLLPRPLLPLLAG
LLLCLPLLKPSKEVVADGQAQVWVLDVGQGQAVWVRTAQHSLMYDAGPFMAGFDAGERIVVPVLRGYGQTGLDELLISHA
DADHAGGAQAILDAVEVKRVVSGQPAEHPPSFAAQDCRAEQWQWDDVWFWRWQWHNAKDSNQKSCVLLIVAQGERLLLTG
DLDAAGEAALLADWPWLQVDWLVAGHHGSRTSTSRRFVQAIAPQYALISRGKHNSYGHPHPQVLANLQREQVRIYDTAHD
KAVQIYLGRYSEPSSMARQLRFWR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=767645 O6P33_RS06045 WP_269819303.1 1268747..1270981(+) (comA) [Denitrificimonas caeni strain CE14]
GTGCAAATATCCATAATCGCTTTGATTGTTGGCTTGCTGAGTTTGCGCGTCATGCCGTGGTTGCCAAGTATATTTTGGCT
GCTATCGGGGCTGCTGGTTGCGTTGTTGTTGCTACGCACGCGCTTGCATCTTTTCGGTTTCTTTTTGTTGGGGCTGTGTT
GGGCGTGTTTAAGTGCGCAGTGGGCGTTAGATGATCAGCTTGCTGCAGCATTAGATGGGCGCACTTTGTGGATTACTGGG
ACAGTTGTAGGTTTGCCTGAATGGCCAGTTGTGCAAGGGCAACCCCCAACTGTGCGTTTTGAATTGGACGATGCGGTTTC
CCGTCGAGCACAACTGCCGCGACGCATACGTGTGTCTTGGCGTACCCCAGCAGAGCCTGTGAAAGCGGGGCAACGTTGGC
GCTTAGCGGTGCGCTTAAAACGTCCTGATGGCTCTCTCAATCCTTATGGCTTTGATTACCAAGCTTGGCTGCTGGCTAAA
CGTATTGGGGCTACAGGCTCGGTTAAAGCGGGTCAGCTGGTTGCGCAGGGGCAGGGTTTAGATCATTGGCGTGAGCAAGT
CAGAGCGCGTATTCAGCGCTATGCACCAGAGCCCGCGCAAGGCCTGATGACGGCTTTAATCTTGGGTGATGGCTCGGGTT
TAAGCGCAGAGCAGTGGCAAACATTACAAGCTACCGGCACTGTGCACCTTATGGTGATTTCAGGTCAGCACATCAGTTTA
ATTGCCGCGGTGGCCTATGCTGTGGTTTTTTGGTTGATGCGTTTGGGTTGGTGGCCGCAGCGCGTGCCCTGGTTGCCAGC
TGCTTGCGTGCTTTCGATATCGGCGGCGTTAGCCTATGGCACTTTTGCCGGCTTTGCCGTGCCAGTGCAGCGCGCGTGCA
TCATGGTGATGGTGGCTTTACTTTGGCGTTGGCATTTTCAGCATTTAAGTGTGTGGATAGCGTTTTTAATTGCTTTAGCA
GTGGTGCTAATTTATGAGCCTTTAGTGGTTTTGCAGGCTGGCTTTTGGTTGTCATTTACTGCGGTGGGTGCGTTGATACT
GGCGTTTGCAGCACGCTTGGGACCGTGGCGCTGGTGGCATATGGTAGGGCGCACACAATGGGTTGCAGCAATTGGTCTTG
CCCCTTTTTTGCTGGCTTTGAGTTTGCCGGTGAGCTTGATGGGACCGCTGGCAAATATTTTTGCGGTGCCGTGGTTGAGC
TTGCTGGCGCTGCCTTTAACCTTATTGGGCGCGTTGCTATTGCCTTGGCCAAGTCTTGCGAGCTGGGTTCTCAGTGCGGC
AGCTTGGTGTTTAACTGCTATGTTTGCTGGCTTGGATTGGTTTGCGCAAGGTTGGCCGGTCTGGCAGGGCAGCGGGGTAA
CGGTGGCGGCGCTGCTATTAGCTGTGTTGGGAGTGCTGTGCTGGTTGTTGCCACGGCCCCTGTTACCGCTGCTCGCAGGG
TTGCTGCTTTGCTTGCCGCTGCTTAAACCGAGTAAAGAAGTGGTTGCAGATGGGCAAGCGCAGGTGTGGGTGCTGGATGT
GGGGCAAGGGCAAGCAGTTTGGGTGAGAACTGCGCAGCACAGCCTAATGTATGATGCCGGCCCTTTTATGGCAGGGTTTG
ATGCCGGCGAACGCATCGTGGTGCCGGTGTTACGCGGTTATGGCCAGACTGGTTTAGATGAGTTACTGATTTCTCATGCA
GATGCCGATCATGCCGGTGGCGCACAGGCGATTTTGGATGCAGTGGAGGTTAAGCGAGTGGTCAGCGGTCAACCAGCAGA
GCATCCACCAAGCTTTGCTGCACAAGATTGTCGAGCTGAGCAGTGGCAGTGGGATGACGTTTGGTTTTGGCGTTGGCAGT
GGCATAACGCGAAAGACAGTAATCAAAAGTCCTGCGTGCTGCTGATTGTTGCGCAAGGCGAGCGTTTATTGTTGACCGGT
GACTTGGATGCTGCTGGTGAAGCAGCATTACTAGCCGACTGGCCATGGTTGCAAGTTGATTGGTTGGTGGCTGGGCACCA
TGGCAGTCGTACTTCCACTTCGCGCCGTTTTGTACAGGCCATTGCCCCGCAGTATGCGTTAATTTCCCGTGGCAAACACA
ACAGTTATGGGCATCCGCACCCGCAAGTGTTGGCAAATTTGCAGCGTGAACAGGTGCGTATTTATGATACGGCGCATGAT
AAAGCGGTGCAGATTTACTTAGGGCGCTACAGCGAGCCAAGCAGTATGGCTAGGCAATTGCGCTTTTGGCGTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-172)

Competence protein (Competence)

(206-469)

Metallo-beta-lactamase superfamily (Lactamase_B)

(506-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

50.414

97.312

0.491