Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   O6U12_RS17210 Genome accession   NZ_CP114899
Coordinates   3240181..3240471 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3235181..3245471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS17195 (O6U12_17195) yabE 3235376..3236689 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  O6U12_RS17200 (O6U12_17200) dayD 3236845..3237612 (-) 768 WP_017696381.1 TatD family hydrolase -
  O6U12_RS17205 (O6U12_17205) metG 3237691..3239685 (-) 1995 WP_017696382.1 methionine--tRNA ligase -
  O6U12_RS17210 (O6U12_17210) abrB 3240181..3240471 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  O6U12_RS17215 (O6U12_17215) rsmI 3240520..3241398 (-) 879 WP_017696383.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  O6U12_RS17220 (O6U12_17220) yazA 3241373..3241672 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  O6U12_RS17225 (O6U12_17225) trmNF 3241659..3242402 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  O6U12_RS17230 (O6U12_17230) yabA 3242461..3242820 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  O6U12_RS17235 (O6U12_17235) ricT 3242835..3243662 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  O6U12_RS17240 (O6U12_17240) holB 3243665..3244654 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  O6U12_RS17245 (O6U12_17245) yaaR 3244666..3245106 (-) 441 WP_009966249.1 YaaR family protein -
  O6U12_RS17250 (O6U12_17250) darA 3245119..3245448 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=767615 O6U12_RS17210 WP_003226760.1 3240181..3240471(+) (abrB) [Bacillus subtilis strain]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=767615 O6U12_RS17210 WP_003226760.1 3240181..3240471(+) (abrB) [Bacillus subtilis strain]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1