Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   O6U12_RS12790 Genome accession   NZ_CP114899
Coordinates   2353871..2354665 (-) Length   264 a.a.
NCBI ID   WP_017697678.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2350379..2357299 2353871..2354665 within 0


Gene organization within MGE regions


Location: 2350379..2357299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS12770 (O6U12_12770) yfhJ 2351640..2351909 (-) 270 WP_003243789.1 YfhJ family protein -
  O6U12_RS12775 (O6U12_12775) sspK 2352034..2352186 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  O6U12_RS12780 (O6U12_12780) yfhI 2352218..2353411 (-) 1194 WP_017697680.1 MFS transporter -
  O6U12_RS12785 (O6U12_12785) yfhH 2353555..2353869 (-) 315 WP_017697679.1 YfhH family protein -
  O6U12_RS12790 (O6U12_12790) recX 2353871..2354665 (-) 795 WP_017697678.1 recombination regulator RecX Regulator
  O6U12_RS12795 (O6U12_12795) yfhF 2354754..2355664 (+) 911 Protein_2511 TIGR01777 family oxidoreductase -
  O6U12_RS12800 (O6U12_12800) yfhE 2355719..2355829 (+) 111 WP_003223230.1 YfhE family protein -
  O6U12_RS12805 (O6U12_12805) yfhD 2355896..2356087 (+) 192 WP_014479215.1 YfhD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30998.18 Da        Isoelectric Point: 6.6687

>NTDB_id=767605 O6U12_RS12790 WP_017697678.1 2353871..2354665(-) (recX) [Bacillus subtilis strain]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEEN

Nucleotide


Download         Length: 795 bp        

>NTDB_id=767605 O6U12_RS12790 WP_017697678.1 2353871..2354665(-) (recX) [Bacillus subtilis strain]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCAACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGAACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.62

99.621

0.992