Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   O6U12_RS11720 Genome accession   NZ_CP114899
Coordinates   2159411..2159989 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154411..2164989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS11685 (O6U12_11685) lepB 2154419..2154925 (-) 507 WP_003233128.1 signal peptidase I -
  O6U12_RS11690 (O6U12_11690) yhjE 2154927..2155550 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  O6U12_RS11695 (O6U12_11695) - 2155702..2156073 (+) 372 WP_014476361.1 hypothetical protein -
  O6U12_RS11700 (O6U12_11700) yhjC 2156272..2156472 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  O6U12_RS11705 (O6U12_11705) yhjB 2156469..2157938 (+) 1470 WP_017695341.1 sodium:solute symporter family protein -
  O6U12_RS11710 (O6U12_11710) yhjA 2157982..2158250 (-) 269 Protein_2312 excalibur calcium-binding domain-containing protein -
  O6U12_RS11715 (O6U12_11715) yhxD 2158467..2159366 (+) 900 WP_017695343.1 SDR family oxidoreductase -
  O6U12_RS11720 (O6U12_11720) comK 2159411..2159989 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  O6U12_RS11725 (O6U12_11725) yhzC 2160282..2160515 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  O6U12_RS11730 (O6U12_11730) yhxC 2160543..2161400 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  O6U12_RS11735 (O6U12_11735) comW 2161504..2163033 (+) 1530 Protein_2317 FAD-dependent oxidoreductase -
  O6U12_RS22675 hemAT 2163289..2163666 (+) 378 Protein_2318 heme-based aerotactic transducer HemAT -
  O6U12_RS22680 - 2163673..2164470 (+) 798 WP_413158713.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=767601 O6U12_RS11720 WP_003245329.1 2159411..2159989(-) (comK) [Bacillus subtilis strain]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=767601 O6U12_RS11720 WP_003245329.1 2159411..2159989(-) (comK) [Bacillus subtilis strain]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1