Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   O6U12_RS09655 Genome accession   NZ_CP114899
Coordinates   1783163..1783627 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778163..1788627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS09635 (O6U12_09635) fadH 1779351..1780115 (-) 765 WP_017697272.1 2,4-dienoyl-CoA reductase -
  O6U12_RS09640 (O6U12_09640) ppeE 1780258..1781118 (+) 861 WP_017697271.1 metallophosphoesterase -
  O6U12_RS09645 (O6U12_09645) ltdD 1781175..1781669 (+) 495 WP_072557193.1 L,D-transpeptidase family protein -
  O6U12_RS09650 (O6U12_09650) ykuC 1781745..1783037 (+) 1293 WP_017697269.1 MFS transporter -
  O6U12_RS09655 (O6U12_09655) kre 1783163..1783627 (+) 465 WP_003232406.1 YkyB family protein Regulator
  O6U12_RS09660 (O6U12_09660) cheV 1783671..1784582 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  O6U12_RS09665 (O6U12_09665) - 1784786..1784947 (+) 162 WP_003245246.1 hypothetical protein -
  O6U12_RS09670 (O6U12_09670) dapX 1785149..1786330 (+) 1182 WP_017697268.1 aminotransferase A -
  O6U12_RS09675 (O6U12_09675) kinA 1786340..1788160 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=767589 O6U12_RS09655 WP_003232406.1 1783163..1783627(+) (kre) [Bacillus subtilis strain]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=767589 O6U12_RS09655 WP_003232406.1 1783163..1783627(+) (kre) [Bacillus subtilis strain]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCCAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1