Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   O6U12_RS09540 Genome accession   NZ_CP114899
Coordinates   1763861..1764436 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758861..1769436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS09520 (O6U12_09520) moeB 1759759..1760778 (-) 1020 WP_017696813.1 molybdopterin-synthase adenylyltransferase MoeB -
  O6U12_RS09525 (O6U12_09525) mobA 1760829..1761428 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  O6U12_RS09530 (O6U12_09530) cse15 1761565..1762530 (+) 966 WP_017696812.1 spore protein Cse15 -
  O6U12_RS09540 (O6U12_09540) rok 1763861..1764436 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  O6U12_RS09545 (O6U12_09545) ykuV 1764902..1765348 (-) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  O6U12_RS09550 (O6U12_09550) ahpA 1765420..1765962 (-) 543 WP_017697282.1 biofilm-specific peroxidase AhpA -
  O6U12_RS09555 (O6U12_09555) mscT 1766199..1767002 (+) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  O6U12_RS09560 (O6U12_09560) ykuS 1767039..1767284 (-) 246 WP_003232382.1 YkuS family protein -
  O6U12_RS09565 (O6U12_09565) dapI 1767346..1768470 (-) 1125 WP_017697280.1 N-acetyldiaminopimelate deacetylase -
  O6U12_RS09570 (O6U12_09570) dapD 1768540..1769250 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=767588 O6U12_RS09540 WP_003232378.1 1763861..1764436(-) (rok) [Bacillus subtilis strain]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=767588 O6U12_RS09540 WP_003232378.1 1763861..1764436(-) (rok) [Bacillus subtilis strain]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1