Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   O6U12_RS05895 Genome accession   NZ_CP114899
Coordinates   1080923..1081543 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075923..1086543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS05875 (O6U12_05875) dnaD 1076208..1076906 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  O6U12_RS05880 (O6U12_05880) nth 1076925..1077584 (+) 660 WP_009967580.1 endonuclease III -
  O6U12_RS05885 (O6U12_05885) ypoC 1077581..1078075 (+) 495 WP_041351582.1 YpoC family protein -
  O6U12_RS05890 (O6U12_05890) ponA 1078151..1080901 (-) 2751 WP_269767393.1 transglycosylase domain-containing protein -
  O6U12_RS05895 (O6U12_05895) recU 1080923..1081543 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  O6U12_RS05900 (O6U12_05900) yppC 1081584..1082546 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  O6U12_RS05905 (O6U12_05905) sspM 1082571..1082675 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  O6U12_RS05910 (O6U12_05910) yppD 1082874..1083119 (+) 246 WP_017696992.1 YppD family protein -
  O6U12_RS05915 (O6U12_05915) yppE 1083165..1083536 (+) 372 WP_017696991.1 YppE family protein -
  O6U12_RS05920 (O6U12_05920) yppF 1083575..1083763 (-) 189 WP_003230690.1 YppF family protein -
  O6U12_RS05925 (O6U12_05925) sppG 1083951..1084328 (+) 378 WP_014477159.1 YppG family protein -
  O6U12_RS05930 (O6U12_05930) ypqA 1084349..1084768 (-) 420 WP_017696990.1 Hsp20/alpha crystallin family protein -
  O6U12_RS05935 (O6U12_05935) ptsA 1084906..1085412 (+) 507 WP_015483368.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=767582 O6U12_RS05895 WP_004399067.1 1080923..1081543(-) (recU) [Bacillus subtilis strain]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=767582 O6U12_RS05895 WP_004399067.1 1080923..1081543(-) (recU) [Bacillus subtilis strain]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1