Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   O6U12_RS04890 Genome accession   NZ_CP114899
Coordinates   899324..900127 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 894324..905127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS04870 (O6U12_04870) yqxC 894434..895279 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  O6U12_RS04875 (O6U12_04875) argR 895377..895826 (+) 450 WP_017696434.1 arginine repressor ArgR -
  O6U12_RS04880 (O6U12_04880) recN 895863..897593 (+) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  O6U12_RS04885 (O6U12_04885) spoIVB 897768..899048 (+) 1281 WP_017696436.1 SpoIVB peptidase -
  O6U12_RS04890 (O6U12_04890) spo0A 899324..900127 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  O6U12_RS04895 (O6U12_04895) yqiG 900592..901710 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  O6U12_RS04900 (O6U12_04900) - 901783..901935 (-) 153 WP_014480226.1 hypothetical protein -
  O6U12_RS04905 (O6U12_04905) - 902246..902542 (+) 297 WP_014480225.1 hypothetical protein -
  O6U12_RS04910 (O6U12_04910) yqiI 902562..903182 (+) 621 WP_080031089.1 N-acetylmuramoyl-L-alanine amidase family protein -
  O6U12_RS04915 (O6U12_04915) glpQB 903261..903992 (+) 732 WP_017696440.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=767581 O6U12_RS04890 WP_003226427.1 899324..900127(+) (spo0A) [Bacillus subtilis strain]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=767581 O6U12_RS04890 WP_003226427.1 899324..900127(+) (spo0A) [Bacillus subtilis strain]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1