Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   O6U12_RS04365 Genome accession   NZ_CP114899
Coordinates   809481..810248 (+) Length   255 a.a.
NCBI ID   WP_017696274.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 804481..815248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS04335 (O6U12_04335) pgpH 804777..806912 (+) 2136 WP_080031083.1 cyclic-di-AMP phosphodiesterase PgpH -
  O6U12_RS04340 (O6U12_04340) ybeY 806913..807386 (+) 474 WP_269767388.1 rRNA maturation RNase YbeY -
  O6U12_RS04345 (O6U12_04345) unpK 807367..807738 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  O6U12_RS04350 (O6U12_04350) - 807857..808267 (+) 411 WP_014480293.1 cytidine deaminase -
  O6U12_RS04355 (O6U12_04355) era 808248..809153 (+) 906 WP_003230051.1 GTPase Era -
  O6U12_RS04360 (O6U12_04360) yqzL 809301..809444 (+) 144 WP_003230053.1 YqzL family protein -
  O6U12_RS04365 (O6U12_04365) recO 809481..810248 (+) 768 WP_017696274.1 DNA repair protein RecO Machinery gene
  O6U12_RS04370 (O6U12_04370) glyQ 810545..811432 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  O6U12_RS04375 (O6U12_04375) glyS 811425..813464 (+) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  O6U12_RS04380 (O6U12_04380) ccpN 813597..814235 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  O6U12_RS04385 (O6U12_04385) ppsR 814261..815073 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29346.03 Da        Isoelectric Point: 8.3080

>NTDB_id=767570 O6U12_RS04365 WP_017696274.1 809481..810248(+) (recO) [Bacillus subtilis strain]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKTNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=767570 O6U12_RS04365 WP_017696274.1 809481..810248(+) (recO) [Bacillus subtilis strain]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGAC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992