Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   O6U12_RS03095 Genome accession   NZ_CP114899
Coordinates   586190..586936 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581190..591936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS03080 (O6U12_03080) - 581416..581607 (-) 192 WP_003222590.1 hypothetical protein -
  O6U12_RS03085 (O6U12_03085) valS 582055..584697 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  O6U12_RS03090 (O6U12_03090) folC 584757..586049 (+) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  O6U12_RS03095 (O6U12_03095) comC 586190..586936 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  O6U12_RS03100 (O6U12_03100) spoIIB 587070..588068 (+) 999 WP_041339276.1 stage II sporulation protein SpoIIB -
  O6U12_RS03105 (O6U12_03105) maf 588221..588790 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  O6U12_RS03110 (O6U12_03110) radC 588827..589522 (+) 696 WP_003246034.1 RadC family protein -
  O6U12_RS03115 (O6U12_03115) mreB 589614..590627 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  O6U12_RS03120 (O6U12_03120) mreC 590658..591530 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=767563 O6U12_RS03095 WP_072592551.1 586190..586936(+) (comC) [Bacillus subtilis strain]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=767563 O6U12_RS03095 WP_072592551.1 586190..586936(+) (comC) [Bacillus subtilis strain]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTAGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996