Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6117_RS02055 Genome accession   NZ_CP114896
Coordinates   442179..442808 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM93     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 437179..447808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6117_RS02035 ycbZ 437580..439340 (-) 1761 WP_000156518.1 Lon protease family protein -
  O6117_RS02040 matP 439526..439978 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6117_RS02045 ompA 440054..441094 (-) 1041 WP_000750416.1 porin OmpA -
  O6117_RS02050 sulA 441451..441960 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O6117_RS02055 sxy/tfoX 442179..442808 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6117_RS02060 yccS 442771..444933 (-) 2163 WP_000875061.1 YccS family putative transporter -
  O6117_RS02065 yccF 444943..445389 (-) 447 WP_001261235.1 YccF domain-containing protein -
  O6117_RS02070 helD 445512..447566 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=767534 O6117_RS02055 WP_000839153.1 442179..442808(+) (sxy/tfoX) [Escherichia coli strain CM93]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767534 O6117_RS02055 WP_000839153.1 442179..442808(+) (sxy/tfoX) [Escherichia coli strain CM93]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1