Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPK28_RS18910 Genome accession   NZ_CP126576
Coordinates   3567954..3568238 (-) Length   94 a.a.
NCBI ID   WP_003185421.1    Uniprot ID   Q65EP9
Organism   Bacillus licheniformis strain CQMB003     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3562954..3573238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS18890 smpB 3563764..3564237 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  QPK28_RS18895 rnr 3564349..3566652 (-) 2304 WP_003185414.1 ribonuclease R -
  QPK28_RS18900 - 3566666..3567412 (-) 747 WP_003185416.1 carboxylesterase -
  QPK28_RS18905 secG 3567553..3567783 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  QPK28_RS18910 abrB 3567954..3568238 (-) 285 WP_003185421.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPK28_RS18915 - 3568267..3568500 (-) 234 WP_085959538.1 helix-turn-helix transcriptional regulator -
  QPK28_RS18920 - 3568653..3569054 (+) 402 WP_009329609.1 transcriptional regulator -
  QPK28_RS18925 - 3569224..3569622 (+) 399 WP_009329610.1 helix-turn-helix transcriptional regulator -
  QPK28_RS18930 - 3569670..3570347 (-) 678 WP_003185432.1 ABC transporter permease -
  QPK28_RS18935 opuCC 3570364..3571281 (-) 918 WP_009329611.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  QPK28_RS18940 - 3571295..3571948 (-) 654 WP_009329612.1 ABC transporter permease -
  QPK28_RS18945 - 3571970..3573109 (-) 1140 WP_003185439.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10486.36 Da        Isoelectric Point: 7.9620

>NTDB_id=767532 QPK28_RS18910 WP_003185421.1 3567954..3568238(-) (abrB) [Bacillus licheniformis strain CQMB003]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=767532 QPK28_RS18910 WP_003185421.1 3567954..3568238(-) (abrB) [Bacillus licheniformis strain CQMB003]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65EP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543