Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QPK28_RS18330 Genome accession   NZ_CP126576
Coordinates   3468166..3470496 (-) Length   776 a.a.
NCBI ID   WP_003185203.1    Uniprot ID   Q65F05
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3463166..3475496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS18310 - 3464490..3465329 (-) 840 WP_003185195.1 aldo/keto reductase -
  QPK28_RS18315 - 3465419..3466279 (-) 861 Protein_3558 ROK family protein -
  QPK28_RS18320 - 3466546..3467670 (+) 1125 WP_003185198.1 aminotransferase class V-fold PLP-dependent enzyme -
  QPK28_RS18325 - 3467750..3468160 (+) 411 WP_003185200.1 DUF5412 domain-containing protein -
  QPK28_RS18330 helD 3468166..3470496 (-) 2331 WP_003185203.1 RNA polymerase recycling motor HelD Machinery gene
  QPK28_RS18335 - 3470675..3471283 (-) 609 WP_003185205.1 trimeric intracellular cation channel family protein -
  QPK28_RS18340 - 3471408..3471892 (+) 485 Protein_3563 GrpB family protein -
  QPK28_RS18345 - 3472031..3472516 (-) 486 WP_003185209.1 GNAT family N-acetyltransferase -
  QPK28_RS18350 - 3472623..3473036 (-) 414 WP_003185211.1 disulfide oxidoreductase -
  QPK28_RS18355 - 3473026..3473721 (-) 696 WP_003185213.1 DsbA family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 89984.80 Da        Isoelectric Point: 6.9676

>NTDB_id=767529 QPK28_RS18330 WP_003185203.1 3468166..3470496(-) (helD) [Bacillus licheniformis strain CQMB003]
MQENGQEWLEEEKRIRLVLKELDQKLHSLKGKTGGLKEDIIDLRKHFWSDVTVNIADENEAVETFFSIKQQAEVLAERER
SHKQFYSQLKNLLKVKESPYFGRVDFLEDGEENAESVYIGLASLMYEKEERFLIYDWRAPISSLFYNYGPGAAQYEVPDE
TVRGTIELKRQFLFKNGQLKAMFNTDMAIGDEVLQEVLGQQADIQMKSIVATIQKEQNQIIRNEKSRFLIVRGAAGSGKT
SAALQRAAYLLYRGRGQIESSQMLLFSPNLLFNSYVANVLPELGEENIQQTTFQEFVARRLGKQVPCETPFDQLEYCLTA
SDGEEQRIRMKSIELKSSLAFKGIIDDYVKYLAKGHLVFKHITFRGKRIITSGQMRKFFAALDHSDTLSNRIEQTGKWLL
QLLNKYERQERKKDWVIEESELLDKEEYLKAYKRLQEEQRFTENTFDDYERERNLLASIVAEREFKPLKQVVKAFGFIDF
KGTYLQLFSGRYTPQTRPDDWQSICTFTQKSFRFEKLLYEDAVPFLYMKNKLKGGGKNTAIRHLFIDEAQDYTPFQLAFL
ESLFPACSITMLGDLNQAILAHAYHDKTLLSGGVFEGEKTEIITLKRSYRSTKEIVELTKRIIEGGEEIEAFNRNGKKPT
LTISADPHAHHKEMASLMTALQKEGLETIAVICKTVRECRDAFQHLQQHAELKLIDKETRTFQKGVVVIPVYLAKGIEFD
AVIIYDASEKQYKKERERTLFYTACTRAMHELHLFSIGKETHFLNGVPNDMYTRRE

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=767529 QPK28_RS18330 WP_003185203.1 3468166..3470496(-) (helD) [Bacillus licheniformis strain CQMB003]
GTGCAGGAAAACGGTCAGGAATGGCTGGAAGAGGAAAAACGAATCCGGCTTGTTTTAAAGGAATTGGATCAAAAGCTTCA
TTCTCTAAAGGGAAAAACCGGCGGATTGAAGGAGGATATCATCGATTTACGGAAACATTTTTGGAGCGATGTCACCGTAA
ACATAGCCGATGAAAATGAAGCGGTTGAAACATTTTTTAGCATTAAACAGCAGGCTGAGGTTTTGGCTGAGAGGGAAAGG
AGCCATAAGCAGTTTTACAGCCAGCTGAAAAACCTGTTAAAAGTGAAAGAATCGCCTTATTTCGGCCGCGTAGATTTTTT
GGAGGACGGCGAAGAAAACGCTGAGTCCGTCTACATCGGACTCGCCTCTTTAATGTATGAAAAAGAAGAGCGGTTTTTGA
TCTATGATTGGAGAGCGCCGATTTCCAGTCTGTTCTATAACTATGGACCCGGCGCGGCTCAATACGAAGTTCCGGACGAG
ACGGTCAGGGGAACGATTGAGCTGAAAAGGCAATTTCTCTTCAAAAACGGACAGCTGAAAGCGATGTTTAATACGGATAT
GGCGATTGGGGATGAAGTCCTTCAGGAAGTGCTGGGGCAGCAGGCCGATATCCAGATGAAAAGCATCGTCGCGACGATTC
AAAAAGAACAGAATCAGATCATTCGGAACGAAAAGAGCCGCTTTTTAATTGTTCGGGGAGCGGCTGGCAGCGGAAAAACG
TCGGCGGCATTGCAGCGGGCCGCATATTTGCTGTACCGCGGCCGCGGGCAGATCGAGTCGAGCCAGATGCTGCTATTCTC
TCCAAACCTGCTTTTTAACAGCTATGTCGCCAATGTTCTGCCTGAGCTCGGAGAGGAAAACATCCAGCAGACGACGTTCC
AGGAATTTGTAGCGCGCCGCCTTGGAAAGCAGGTACCATGCGAGACTCCGTTCGATCAGCTTGAATATTGTTTAACCGCT
TCAGACGGTGAGGAGCAGCGCATCCGGATGAAATCGATTGAATTGAAATCCAGTCTGGCTTTCAAAGGCATCATCGATGA
TTACGTCAAATATTTGGCAAAAGGGCACCTGGTGTTTAAACATATCACCTTTCGCGGAAAAAGGATCATCACAAGCGGTC
AGATGCGGAAATTTTTCGCGGCCCTTGATCATTCAGACACGCTGTCCAACCGGATTGAACAAACGGGAAAATGGCTGTTG
CAGCTCCTGAATAAATATGAACGCCAGGAAAGAAAAAAAGACTGGGTCATCGAAGAAAGCGAGCTGCTGGATAAAGAGGA
ATACTTAAAGGCTTATAAACGTCTTCAGGAGGAACAGCGCTTTACGGAGAATACGTTTGACGATTATGAAAGGGAGCGAA
ACCTCCTTGCCTCCATCGTTGCCGAAAGGGAGTTCAAGCCGCTCAAGCAAGTGGTAAAAGCGTTCGGCTTTATTGATTTT
AAAGGAACATACCTTCAGCTTTTTTCCGGACGCTATACCCCGCAAACGCGCCCTGATGACTGGCAGAGCATTTGCACATT
CACTCAGAAAAGCTTTCGTTTTGAGAAGCTGCTTTATGAAGATGCCGTCCCTTTTTTATATATGAAAAACAAGCTGAAAG
GCGGGGGGAAAAACACGGCAATCCGCCATTTATTCATTGATGAAGCCCAGGATTACACGCCTTTTCAACTTGCTTTTTTG
GAGAGCTTGTTTCCCGCGTGCAGCATCACGATGCTGGGAGACTTAAACCAGGCGATTCTTGCCCATGCCTATCACGATAA
GACGCTTCTGTCGGGAGGCGTGTTTGAAGGCGAAAAAACGGAGATCATCACCTTGAAGCGCAGCTACAGGTCGACGAAAG
AAATTGTTGAATTGACAAAGCGCATCATCGAAGGGGGCGAAGAGATCGAAGCTTTTAATAGGAACGGCAAAAAACCGACT
TTGACAATATCAGCCGATCCTCATGCACACCATAAAGAGATGGCTTCCCTTATGACCGCCCTTCAAAAAGAAGGACTTGA
GACGATTGCAGTCATCTGTAAAACAGTCCGGGAATGCAGGGATGCGTTCCAGCATCTTCAGCAGCATGCAGAGCTTAAAC
TGATCGATAAAGAAACGAGAACGTTTCAAAAAGGCGTGGTCGTCATTCCCGTCTATTTGGCGAAAGGGATCGAATTTGAT
GCCGTCATCATTTATGACGCTTCTGAAAAGCAATACAAAAAGGAAAGAGAGCGGACTTTATTTTATACGGCGTGCACGAG
GGCGATGCATGAGCTGCACCTCTTTTCCATTGGAAAAGAAACGCATTTTTTAAACGGCGTCCCAAATGATATGTACACGA
GAAGAGAGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(706-754)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65F05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

56.347

99.485

0.561