Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QPK28_RS13995 Genome accession   NZ_CP126576
Coordinates   2647707..2648144 (-) Length   145 a.a.
NCBI ID   WP_009327905.1    Uniprot ID   Q8VQ70
Organism   Bacillus licheniformis strain CQMB003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642707..2653144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS13945 sinI 2642882..2643058 (+) 177 WP_003183444.1 anti-repressor SinI family protein Regulator
  QPK28_RS13950 sinR 2643092..2643427 (+) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  QPK28_RS13955 - 2643532..2644326 (-) 795 WP_003183447.1 TasA family protein -
  QPK28_RS13960 - 2644400..2644984 (-) 585 WP_003183449.1 signal peptidase I -
  QPK28_RS13965 tapA 2644981..2645709 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  QPK28_RS13970 - 2646019..2646306 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  QPK28_RS13975 - 2646330..2646512 (-) 183 WP_003183456.1 YqzE family protein -
  QPK28_RS13980 comGG 2646601..2646966 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  QPK28_RS13985 comGF 2646979..2647467 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  QPK28_RS13990 comGE 2647376..2647723 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  QPK28_RS13995 comGD 2647707..2648144 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD Machinery gene
  QPK28_RS14000 comGC 2648150..2648443 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  QPK28_RS14005 comGB 2648457..2649491 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  QPK28_RS14010 comGA 2649481..2650545 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  QPK28_RS14015 - 2650702..2651541 (-) 840 WP_003183480.1 STAS domain-containing protein -
  QPK28_RS14025 - 2651783..2652160 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QPK28_RS14030 - 2652369..2652614 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16249.07 Da        Isoelectric Point: 9.6739

>NTDB_id=767499 QPK28_RS13995 WP_009327905.1 2647707..2648144(-) (comGD) [Bacillus licheniformis strain CQMB003]
MNQKGFTLLESLTVLMIGSIMFSLLFALLPPIYEKRIVQHFVSQLEEDLLYAQQTALVRHTTVKVQFDFAGCRYIMKHSD
EGSSPELVRTYSCNIAIKKSTLKPILTFNPSGVPNQGGKIVIDTQHASFILTIYLGSGKINVQKK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=767499 QPK28_RS13995 WP_009327905.1 2647707..2648144(-) (comGD) [Bacillus licheniformis strain CQMB003]
ATGAATCAAAAAGGATTTACGCTTTTGGAAAGTTTAACTGTATTGATGATCGGTTCTATTATGTTCTCTCTTCTCTTTGC
TCTACTGCCTCCCATTTATGAAAAAAGAATCGTTCAGCACTTTGTCTCACAGCTTGAAGAGGATTTGCTTTACGCTCAGC
AGACGGCTCTCGTCCGCCATACGACGGTTAAGGTGCAGTTTGACTTTGCCGGCTGCCGCTATATCATGAAGCATTCGGAC
GAAGGCTCATCGCCTGAACTGGTCAGGACATACAGCTGCAATATCGCAATCAAAAAGTCGACGCTCAAACCAATTCTTAC
TTTTAATCCAAGCGGTGTTCCGAATCAAGGGGGAAAGATCGTGATCGATACACAGCATGCCTCTTTTATACTGACGATCT
ATTTAGGAAGCGGAAAGATTAATGTTCAAAAAAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

39.86

98.621

0.393