Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QPK28_RS13000 Genome accession   NZ_CP126576
Coordinates   2470405..2471901 (-) Length   498 a.a.
NCBI ID   WP_009327989.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2465405..2476901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS12970 - 2465463..2466737 (-) 1275 WP_003183047.1 Glu/Leu/Phe/Val dehydrogenase -
  QPK28_RS12975 - 2466933..2467517 (-) 585 WP_003183050.1 genetic competence negative regulator -
  QPK28_RS12980 - 2467671..2468456 (-) 786 WP_003183052.1 metallophosphoesterase -
  QPK28_RS12985 - 2468535..2468978 (-) 444 WP_011198077.1 YpbF family protein -
  QPK28_RS12990 - 2469046..2469825 (-) 780 WP_224990911.1 LysM peptidoglycan-binding domain-containing protein -
  QPK28_RS12995 - 2469767..2470411 (-) 645 WP_003183057.1 CPBP family intramembrane glutamic endopeptidase -
  QPK28_RS13000 recS 2470405..2471901 (-) 1497 WP_009327989.1 ATP-dependent DNA helicase RecQ Machinery gene
  QPK28_RS13005 - 2471894..2472952 (-) 1059 WP_003183062.1 helix-turn-helix domain-containing protein -
  QPK28_RS13010 - 2473216..2473464 (+) 249 WP_003183064.1 ferredoxin -
  QPK28_RS13015 - 2473618..2474196 (-) 579 WP_003183066.1 ECF transporter S component -
  QPK28_RS13020 serA 2474739..2476316 (+) 1578 WP_009327988.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55884.40 Da        Isoelectric Point: 7.7924

>NTDB_id=767489 QPK28_RS13000 WP_009327989.1 2470405..2471901(-) (recS) [Bacillus licheniformis strain CQMB003]
MDKLHQALRRYFGYHAFKKGQETIIKSVLEGRDTVAMLPTGGGKSLCYQLPGLLLDGTVLIVSPLLSLMEDQVQQLKMRG
EKRAAALNSALTHKEKNDVLNRLHRLKYLYISPEALQSGQMLKKLQLLNVSLFVVDEAHCISQWGHDFRPDYSKLGDIKA
LLGHPVTLALTATATEATLKDISEILGLKAANYLIHSVDRPNIALHIEKLRDTAEKTERLTGLVQKLQGPGLVYCPTRKW
AEELADKLRKEANLRTGFYHGGMEASDRMLIQQQFIRNQLDVVCCTNAFGMGVDKPDIRYVIHFSLPQTIEAYLQEIGRA
GRDGKRSVSILLKAPGDEEIQEQLIQMEALSQSDIGFLYEKLAGVKDERCRREALQLAGLSETQARHFLHLYEKVHHLGG
DGRAVIQREMDSRRQLKLKKAAGFAAVTETEGCFRESLLAYFNEQKKPPKTDETACCTSCGLSLEAYEVKGDRPSMNKLT
AWEEELDTIFAASCDRVC

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=767489 QPK28_RS13000 WP_009327989.1 2470405..2471901(-) (recS) [Bacillus licheniformis strain CQMB003]
ATGGATAAACTTCATCAGGCGCTCCGCAGGTATTTTGGTTATCATGCTTTTAAAAAAGGCCAGGAAACGATCATCAAAAG
CGTGCTGGAGGGACGGGACACGGTGGCGATGCTTCCGACAGGAGGCGGGAAATCGCTGTGCTATCAGCTCCCAGGGCTTT
TGTTAGACGGCACCGTCCTGATCGTCTCGCCGCTTTTGTCTTTAATGGAAGACCAGGTGCAGCAATTGAAGATGCGCGGA
GAGAAGAGAGCTGCCGCCTTGAACAGCGCTTTGACACACAAAGAAAAAAATGACGTATTAAACCGGCTTCACCGCCTCAA
ATATCTGTACATTTCACCAGAAGCGCTTCAGTCCGGCCAAATGCTGAAAAAGCTTCAATTGCTCAATGTCAGCCTTTTTG
TCGTTGATGAAGCCCACTGCATCTCACAATGGGGGCATGATTTCAGGCCTGATTATTCGAAGCTTGGAGACATCAAGGCG
CTCCTCGGTCATCCCGTCACTCTGGCGCTTACAGCAACGGCAACCGAAGCGACATTAAAGGACATTTCGGAAATCCTGGG
GCTTAAAGCCGCCAATTATTTGATTCATTCGGTCGACCGTCCGAACATTGCGCTTCATATTGAAAAGCTGAGGGATACTG
CTGAGAAGACGGAGCGGCTGACAGGGCTGGTTCAAAAGCTGCAAGGTCCTGGCCTTGTTTATTGCCCGACGAGAAAATGG
GCTGAAGAACTGGCTGACAAGCTCCGTAAAGAAGCAAACTTGAGAACGGGATTTTATCATGGCGGGATGGAGGCAAGCGA
CAGGATGCTGATCCAGCAGCAGTTTATCCGCAATCAGCTTGATGTGGTCTGCTGTACAAACGCCTTCGGTATGGGAGTGG
ACAAGCCGGATATCAGATATGTGATCCACTTTAGCCTCCCGCAGACGATTGAGGCGTATCTGCAGGAAATCGGACGTGCC
GGCAGGGATGGAAAGCGGAGCGTCAGCATTTTGCTGAAGGCTCCGGGAGACGAGGAAATCCAGGAGCAGCTGATTCAAAT
GGAAGCCCTCTCCCAAAGCGATATCGGCTTTTTATACGAAAAGCTTGCAGGAGTGAAAGATGAACGCTGCCGGCGGGAAG
CTCTGCAGCTGGCCGGTTTATCGGAAACGCAAGCCCGCCATTTTCTCCATCTTTATGAGAAGGTGCATCATCTGGGCGGC
GATGGCCGGGCGGTCATTCAGAGGGAGATGGACAGCCGCAGGCAGCTCAAATTGAAAAAAGCGGCGGGATTCGCCGCCGT
CACCGAAACAGAAGGGTGTTTCAGGGAAAGCTTGCTCGCTTATTTTAATGAACAAAAAAAGCCGCCGAAAACGGATGAAA
CAGCGTGCTGCACATCCTGCGGTTTAAGTCTTGAAGCATACGAAGTCAAAGGAGACCGTCCGTCTATGAACAAATTGACA
GCGTGGGAAGAAGAATTGGATACCATATTTGCCGCCAGCTGTGATCGTGTATGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-181)

Helicase conserved C-terminal domain (Helicase_C)

(216-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

58.621

98.996

0.58