Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6R07_RS20335 Genome accession   NZ_CP114893
Coordinates   4129554..4130183 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4124554..4135183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R07_RS20320 helD 4124796..4126850 (-) 2055 WP_001295354.1 DNA helicase IV -
  O6R07_RS20325 yccF 4126973..4127419 (+) 447 WP_001261235.1 YccF domain-containing protein -
  O6R07_RS20330 yccS 4127429..4129591 (+) 2163 WP_000875061.1 YccS family putative transporter -
  O6R07_RS20335 sxy/tfoX 4129554..4130183 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6R07_RS20340 sulA 4130402..4130911 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O6R07_RS20345 ompA 4131268..4132308 (+) 1041 WP_000750416.1 porin OmpA -
  O6R07_RS20350 matP 4132384..4132836 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6R07_RS20355 ycbZ 4133022..4134782 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=767489 O6R07_RS20335 WP_000839153.1 4129554..4130183(-) (sxy/tfoX) [Escherichia coli strain CM13]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767489 O6R07_RS20335 WP_000839153.1 4129554..4130183(-) (sxy/tfoX) [Escherichia coli strain CM13]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1