Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QPK28_RS11835 Genome accession   NZ_CP126576
Coordinates   2264740..2266521 (-) Length   593 a.a.
NCBI ID   WP_025807866.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259740..2271521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS11815 - 2260158..2261138 (-) 981 WP_009328093.1 hypothetical protein -
  QPK28_RS11820 - 2261368..2261877 (+) 510 WP_003182581.1 GNAT family N-acetyltransferase -
  QPK28_RS11825 - 2261950..2263539 (-) 1590 WP_021837534.1 solute:sodium symporter family transporter -
  QPK28_RS11830 - 2263698..2264504 (-) 807 WP_025807864.1 3D domain-containing protein -
  QPK28_RS11835 recQ 2264740..2266521 (-) 1782 WP_025807866.1 DNA helicase RecQ Machinery gene
  QPK28_RS11840 - 2266684..2267202 (-) 519 WP_003182590.1 hypothetical protein -
  QPK28_RS11845 - 2267682..2267855 (+) 174 WP_011198037.1 YjfB family protein -
  QPK28_RS11855 - 2268229..2268581 (-) 353 Protein_2295 MmcQ/YjbR family DNA-binding protein -
  QPK28_RS11860 - 2269487..2270452 (-) 966 WP_009328088.1 nuclease-related domain-containing protein -
  QPK28_RS11865 - 2270623..2270741 (-) 119 Protein_2297 DUF4352 domain-containing protein -
  QPK28_RS11870 - 2270762..2271322 (-) 561 WP_009328087.1 DUF1641 domain-containing protein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66840.44 Da        Isoelectric Point: 6.1705

>NTDB_id=767486 QPK28_RS11835 WP_025807866.1 2264740..2266521(-) (recQ) [Bacillus licheniformis strain CQMB003]
MLEKAEALLQHYFGYPSLRPGQKKAIQSVVSERRDTACIMPTGGGKSICYQIPALLMEGTTIVISPLISLMKDQVDALNQ
LGIQAAYVNSSLGHNEIAERLSVFKEGGYKLFYVTPERLTSPEFIRAISHIHIPLVAIDEAHCISQWGHDFRPSYRHIEG
FLNSLGTRPVVLALTATATPEVHEDICTQLGIEKENTVFTGFSRDNLTFKILKGENRDRFIESYVEKNRSEAGIIYTATR
KEAERISSRLSQKGIAAGCYHGGMDDEERDRQQDLFLNDEISVMTATSAFGMGIDKSNIRYVIHAQIPKNMESYYQEAGR
AGRDGLDSECILLFSPQDIRLQRFLIEQSTEDEDIRAQDVKKLRQMVDFCHTEGCLERFILSYFGEVPTEDCGRCGSCLD
TRSITDVTKEAQMVLSCIIRMGERFGKTMVAQVLAGSKNKKVTENGFQQLSTYGILKKRSIADISDFIEFLIADEYIKMS
DGAYPVLFVANKGRNVLLGREAVMRKEKMQTNQIVKDDELFERLRALRRKLAQEQGVPPFVVFSDETLREMSGKVPLTDE
ELLSVKGVGEQKRVKYGAVFLQELQAYKTEKEA

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=767486 QPK28_RS11835 WP_025807866.1 2264740..2266521(-) (recQ) [Bacillus licheniformis strain CQMB003]
ATGCTAGAGAAAGCCGAAGCACTATTGCAGCACTATTTTGGCTATCCTTCACTGCGCCCGGGGCAGAAGAAAGCCATTCA
ATCTGTCGTTTCTGAAAGGCGAGATACAGCATGCATTATGCCGACGGGCGGAGGCAAATCAATCTGCTACCAAATTCCCG
CGCTCCTTATGGAAGGGACAACCATTGTGATCTCTCCTTTAATTTCCTTGATGAAGGACCAGGTGGATGCTTTAAATCAG
CTTGGAATTCAAGCTGCGTACGTGAACAGTTCTTTAGGCCATAACGAAATCGCTGAGCGGCTCTCCGTATTTAAGGAAGG
CGGCTACAAGCTCTTTTATGTAACACCTGAGCGGCTGACGTCTCCCGAATTCATTCGCGCGATTTCCCACATTCATATTC
CGCTGGTAGCCATTGATGAAGCTCATTGCATTTCACAGTGGGGACATGATTTCAGGCCGAGCTACAGACATATTGAAGGC
TTTTTAAATAGCCTCGGCACCCGCCCGGTTGTATTGGCGTTGACGGCTACCGCAACGCCCGAGGTTCATGAGGATATTTG
TACACAGCTCGGGATCGAAAAAGAGAACACGGTTTTTACCGGTTTTTCACGGGATAATTTGACGTTTAAAATTTTAAAAG
GCGAAAACAGGGACCGTTTTATCGAATCATATGTGGAGAAAAACCGCTCAGAGGCGGGAATTATCTATACAGCGACAAGA
AAGGAAGCCGAAAGAATATCAAGCCGCCTCTCTCAAAAAGGAATTGCGGCCGGGTGCTATCACGGCGGGATGGATGATGA
AGAAAGAGACCGGCAGCAGGATCTCTTTTTAAATGATGAGATCAGTGTAATGACAGCGACCTCGGCGTTTGGAATGGGCA
TCGATAAATCCAATATCCGCTATGTGATTCATGCCCAAATTCCAAAAAATATGGAGAGCTACTACCAGGAGGCGGGACGA
GCCGGACGCGACGGCCTTGACAGCGAGTGCATCCTGCTGTTTTCCCCTCAGGACATTCGGCTTCAGCGGTTTTTAATCGA
ACAGTCGACAGAAGATGAAGACATTCGGGCGCAAGACGTGAAAAAACTGAGGCAAATGGTTGATTTTTGCCATACGGAAG
GCTGTCTCGAACGGTTTATTCTTTCTTATTTTGGCGAAGTTCCAACCGAAGACTGCGGCAGGTGCGGCAGCTGTCTCGAC
ACCCGAAGCATCACCGATGTGACGAAGGAGGCACAGATGGTGCTGTCCTGCATCATCCGCATGGGAGAAAGGTTCGGAAA
AACCATGGTGGCGCAAGTTCTGGCAGGTTCGAAAAATAAGAAAGTGACCGAAAACGGCTTCCAGCAATTATCGACTTACG
GAATTTTAAAGAAACGGTCTATTGCCGACATAAGCGATTTTATAGAGTTTTTAATCGCAGATGAGTACATCAAAATGTCC
GACGGGGCATATCCTGTTCTCTTTGTCGCCAACAAGGGGCGAAACGTTTTGCTCGGCCGGGAAGCGGTGATGCGCAAAGA
AAAAATGCAAACAAATCAAATCGTTAAAGATGACGAATTGTTTGAACGGTTAAGGGCGCTGCGCAGAAAGCTTGCTCAGG
AACAAGGCGTGCCTCCTTTTGTTGTATTCTCTGACGAAACGCTGCGGGAAATGAGCGGGAAAGTCCCTCTGACAGACGAA
GAGCTTTTGTCAGTCAAAGGAGTGGGAGAACAAAAAAGAGTAAAATACGGAGCTGTATTTCTACAGGAGCTTCAAGCCTA
TAAAACTGAGAAAGAAGCATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(225-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

RQC domain (RQC)

(403-509)

HRDC domain (HRDC)

(518-583)

DEAD/DEAH box helicase (DEAD)

(20-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

71.21

98.988

0.705