Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   QPK28_RS10935 Genome accession   NZ_CP126576
Coordinates   2070833..2071456 (-) Length   207 a.a.
NCBI ID   WP_003182222.1    Uniprot ID   Q65J42
Organism   Bacillus licheniformis strain CQMB003     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065833..2076456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS10905 wrbA 2066201..2066812 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  QPK28_RS10910 - 2067133..2067273 (+) 141 WP_003182211.1 hypothetical protein -
  QPK28_RS10915 - 2067266..2068099 (+) 834 WP_003182213.1 prohibitin family protein -
  QPK28_RS10920 - 2068190..2068951 (+) 762 WP_003182215.1 hypothetical protein -
  QPK28_RS10925 - 2069011..2069850 (+) 840 WP_003182218.1 thymidylate synthase -
  QPK28_RS10930 nucA/comI 2070209..2070637 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPK28_RS10935 dinR/lexA 2070833..2071456 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  QPK28_RS10940 yneA 2071609..2071920 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  QPK28_RS10945 - 2071939..2072586 (+) 648 WP_003182227.1 recombinase family protein -
  QPK28_RS10950 - 2072652..2072885 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  QPK28_RS10955 recP/tkt 2073052..2075055 (+) 2004 WP_009328229.1 transketolase Machinery gene
  QPK28_RS10960 sirA 2075210..2075647 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  QPK28_RS10965 - 2075732..2075950 (+) 219 WP_003182236.1 YneF family protein -
  QPK28_RS10970 - 2076031..2076192 (-) 162 WP_229107189.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23263.85 Da        Isoelectric Point: 5.3807

>NTDB_id=767481 QPK28_RS10935 WP_003182222.1 2070833..2071456(-) (dinR/lexA) [Bacillus licheniformis strain CQMB003]
MTKLSKRQLDILRFIKEEVKRKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDTEEEIHIPKN
QVVNVPVIGKVTAGTPITAVENIEEYFPLPERLAPPDEHVFMLEIMGESMIDAGILDQDYVIVKQQNTANNGDIVVAMTE
DDEATVKRFFKEETHIRLQPENPTMEPIILQNVTILGKVIGVFRTVH

Nucleotide


Download         Length: 624 bp        

>NTDB_id=767481 QPK28_RS10935 WP_003182222.1 2070833..2071456(-) (dinR/lexA) [Bacillus licheniformis strain CQMB003]
ATGACGAAGCTATCAAAAAGACAACTTGATATTTTGCGTTTCATTAAAGAAGAAGTGAAGCGCAAAGGCTATCCGCCTTC
CGTCAGGGAGATCGGAGAAGCGGTCGGCCTGGCGTCAAGTTCAACGGTACACGGCCACTTGGCAAGGCTTGAAACGAAGG
GATTGATCAGAAGGGATCCGACGAAGCCGAGAGCGATCGAAATTCTCGATACAGAGGAGGAAATTCATATTCCGAAAAAC
CAGGTTGTCAATGTCCCGGTCATCGGAAAGGTGACCGCCGGTACACCGATTACCGCAGTCGAAAACATCGAGGAATACTT
TCCGCTTCCCGAACGCCTGGCGCCGCCGGATGAGCACGTCTTCATGCTGGAGATCATGGGAGAAAGCATGATCGATGCCG
GAATTCTTGATCAAGATTATGTGATTGTCAAGCAGCAGAACACCGCAAACAACGGGGATATCGTCGTTGCGATGACCGAA
GACGACGAAGCGACTGTTAAGCGGTTTTTCAAGGAGGAAACCCATATCCGCCTTCAGCCGGAAAACCCGACGATGGAGCC
GATCATCCTTCAGAATGTGACGATTCTCGGAAAAGTCATCGGCGTTTTCCGCACTGTTCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65J42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

91.304

100

0.913