Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QPK28_RS09440 Genome accession   NZ_CP126576
Coordinates   1841486..1841917 (+) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain CQMB003     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836486..1846917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS09420 - 1836532..1837452 (+) 921 WP_021837473.1 dipeptidase -
  QPK28_RS09425 tdh 1837577..1838620 (+) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  QPK28_RS09430 - 1838636..1839811 (+) 1176 WP_009328481.1 glycine C-acetyltransferase -
  QPK28_RS09435 miaB 1839955..1841484 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QPK28_RS09440 ymcA 1841486..1841917 (+) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  QPK28_RS09445 cotE 1842160..1842708 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  QPK28_RS09450 hexA 1842819..1845428 (+) 2610 WP_140991797.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=767471 QPK28_RS09440 WP_003181967.1 1841486..1841917(+) (ymcA) [Bacillus licheniformis strain CQMB003]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=767471 QPK28_RS09440 WP_003181967.1 1841486..1841917(+) (ymcA) [Bacillus licheniformis strain CQMB003]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867