Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QPK28_RS09090 Genome accession   NZ_CP126576
Coordinates   1765825..1766187 (+) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain CQMB003     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760825..1771187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS09060 flgD 1761669..1762136 (+) 468 WP_003181782.1 flagellar hook assembly protein FlgD -
  QPK28_RS09065 flgG 1762164..1762955 (+) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  QPK28_RS09070 - 1762998..1763213 (+) 216 WP_003181786.1 flagellar FlbD family protein -
  QPK28_RS09075 fliL 1763210..1763641 (+) 432 WP_003181788.1 flagellar basal body-associated protein FliL -
  QPK28_RS09080 fliM 1763677..1764675 (+) 999 WP_003181789.1 flagellar motor switch protein FliM -
  QPK28_RS09085 fliY 1764665..1765798 (+) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  QPK28_RS09090 pilH 1765825..1766187 (+) 363 WP_003181796.1 response regulator Machinery gene
  QPK28_RS09095 fliZ 1766257..1766874 (+) 618 WP_228767680.1 flagella biosynthesis regulatory protein FliZ -
  QPK28_RS09100 fliP 1766867..1767532 (+) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  QPK28_RS09105 fliQ 1767548..1767817 (+) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  QPK28_RS09110 fliR 1767825..1768601 (+) 777 WP_003181804.1 flagellar biosynthetic protein FliR -
  QPK28_RS09115 - 1768601..1769491 (+) 891 Protein_1750 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  QPK28_RS09120 flhF 1769536..1770648 (+) 1113 WP_003181810.1 flagellar biosynthesis protein FlhF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=767467 QPK28_RS09090 WP_003181796.1 1765825..1766187(+) (pilH) [Bacillus licheniformis strain CQMB003]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=767467 QPK28_RS09090 WP_003181796.1 1765825..1766187(+) (pilH) [Bacillus licheniformis strain CQMB003]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375