Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6Q95_RS00920 Genome accession   NZ_CP114892
Coordinates   204649..205278 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 199649..210278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6Q95_RS00900 ycbZ 200050..201810 (-) 1761 WP_000156518.1 AAA family ATPase -
  O6Q95_RS00905 matP 201996..202448 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6Q95_RS00910 ompA 202524..203564 (-) 1041 WP_000750416.1 porin OmpA -
  O6Q95_RS00915 sulA 203921..204430 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O6Q95_RS00920 sxy/tfoX 204649..205278 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6Q95_RS00925 yccS 205241..207403 (-) 2163 WP_000875061.1 YccS family putative transporter -
  O6Q95_RS00930 yccF 207413..207859 (-) 447 WP_001261235.1 YccF domain-containing protein -
  O6Q95_RS00935 helD 207982..210036 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=767446 O6Q95_RS00920 WP_000839153.1 204649..205278(+) (sxy/tfoX) [Escherichia coli strain CM5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767446 O6Q95_RS00920 WP_000839153.1 204649..205278(+) (sxy/tfoX) [Escherichia coli strain CM5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1