Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6Q44_RS11840 Genome accession   NZ_CP114891
Coordinates   2385105..2385734 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2380105..2390734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6Q44_RS11825 helD 2380347..2382401 (-) 2055 WP_001295354.1 DNA helicase IV -
  O6Q44_RS11830 yccF 2382524..2382970 (+) 447 WP_001261235.1 YccF domain-containing protein -
  O6Q44_RS11835 yccS 2382980..2385142 (+) 2163 WP_000875061.1 YccS family putative transporter -
  O6Q44_RS11840 sxy/tfoX 2385105..2385734 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6Q44_RS11845 sulA 2385953..2386462 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O6Q44_RS11850 ompA 2386819..2387859 (+) 1041 WP_000750416.1 porin OmpA -
  O6Q44_RS11855 matP 2387935..2388387 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6Q44_RS11860 ycbZ 2388573..2390333 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=767435 O6Q44_RS11840 WP_000839153.1 2385105..2385734(-) (sxy/tfoX) [Escherichia coli strain CM2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767435 O6Q44_RS11840 WP_000839153.1 2385105..2385734(-) (sxy/tfoX) [Escherichia coli strain CM2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1