Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O7776_RS19890 Genome accession   NZ_CP114887
Coordinates   4019313..4020686 (-) Length   457 a.a.
NCBI ID   WP_274308600.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4014313..4025686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS19870 ispF 4015719..4016195 (-) 477 WP_274308596.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  O7776_RS19875 ispD 4016498..4017187 (-) 690 WP_274308597.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  O7776_RS19880 - 4017201..4018280 (-) 1080 WP_274308598.1 PIN/TRAM domain-containing protein -
  O7776_RS19885 - 4018585..4019235 (+) 651 WP_274308599.1 acetate uptake transporter -
  O7776_RS19890 radA 4019313..4020686 (-) 1374 WP_274308600.1 DNA repair protein RadA Machinery gene
  O7776_RS19895 - 4021104..4023545 (-) 2442 WP_274308601.1 ATP-dependent Clp protease ATP-binding subunit -
  O7776_RS19900 - 4023535..4024635 (-) 1101 WP_274308602.1 protein arginine kinase -
  O7776_RS19905 - 4024632..4025168 (-) 537 WP_274308603.1 UvrB/UvrC motif-containing protein -
  O7776_RS19910 - 4025181..4025645 (-) 465 WP_241370708.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50218.77 Da        Isoelectric Point: 7.1317

>NTDB_id=767414 O7776_RS19890 WP_274308600.1 4019313..4020686(-) (radA) [Solibacillus daqui strain ZS111008 isolate Daqu]
MAKKKSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVISKGPRGAFQHSSTTTKATPIIQVEAQEETRIVTQMNEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNQGMRVLYISGEESVRQTKLRAERLGVKSAELFIYSETNLEFLNQT
IEEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVNPTDCFIGEVGLTGE
VRRVSRIEQRVQEATKLGFRRAVIPASNIGGWDFPEGIQVVGVETISDALRASFRDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=767414 O7776_RS19890 WP_274308600.1 4019313..4020686(-) (radA) [Solibacillus daqui strain ZS111008 isolate Daqu]
ATGGCAAAAAAGAAATCGAAATTTATGTGCAGTAGCTGTGGCTATGAGGCAGCAAAATGGATGGGGCGTTGTCCGGGATG
TGGTGAGTGGAACACGATGAATGAAGAAGTCGAAGTCATTTCCAAAGGACCCCGTGGAGCATTTCAACATTCATCGACTA
CAACAAAGGCGACGCCAATAATTCAAGTTGAAGCACAGGAAGAAACACGCATCGTTACACAAATGAATGAATTTAACCGT
GTTCTTGGTGGCGGAATTGTGCCTGGTTCACTCGTATTAATCGGTGGTGATCCGGGTATCGGTAAGTCAACGTTACTCCT
TCAAGTATCGGCATTATTATCAAACCAAGGCATGCGCGTATTATATATTTCAGGTGAGGAATCGGTACGTCAAACGAAGC
TACGAGCAGAACGTTTAGGTGTCAAATCCGCGGAGCTCTTTATTTATTCAGAAACGAACTTAGAATTTTTAAATCAAACA
ATTGAAGAAGTTCAGCCGAAATTTGTGATTGTCGATTCGATTCAAACAGTGCATCATCCAGAAGTTACAAGTGCACCAGG
GAGTGTTTCGCAAGTACGAGAATGTACGGCAGAGCTAATGCGAATCGCGAAAACGAAAAATATTGCGATTTTCTTAGTTG
GTCACGTAACGAAAGAAGGACAAATTGCGGGTCCACGTATTTTAGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGT
GAACGTCATCATAATCATCGTATTTTACGCAGTCAAAAAAACCGATTTGGTTCGACAAATGAAATTGCGATTTTTGAAAT
GCTACAAGGTGGATTGAAGGAAGTATTAAATCCGTCCGAGTTGTTTTTACAAGAGCGTTCACAAGGTGCTCCAGGCTCGA
CGATAGTAGCCTCAATGGAAGGTACGCGCCCAATTTTAGTTGAAATTCAGTCGCTCGTTACGCCAACGAGCTTTAATTAT
CCAAAGCGCATGGCGACAGGTGTCGATCAAAACCGTGTGCAGTTACTGATGGCCGTTCTTGAAAAACGCATGGGCATGAT
GCTTCAGGCACAAGATGCGTATATTAAAGTAGCAGGCGGTGTAAAGTTAGACGAACCAGCAATTGATTTAGCTGTTTTAA
CGAGCATTGTTTCAAGCTTCAAAGATCAAGCAGTAAATCCAACTGACTGCTTTATTGGTGAGGTTGGTTTAACGGGTGAG
GTACGCCGAGTCTCTCGTATTGAACAGCGTGTGCAAGAAGCAACGAAATTAGGATTCCGTCGTGCGGTCATTCCAGCATC
AAATATTGGCGGATGGGACTTTCCGGAAGGTATTCAAGTAGTAGGTGTCGAAACAATTAGTGACGCATTACGTGCATCTT
TTAGGGATCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(69-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

62.418

99.562

0.621
  radA Streptococcus pneumoniae D39

62.418

99.562

0.621
  radA Streptococcus pneumoniae R6

62.418

99.562

0.621
  radA Streptococcus pneumoniae TIGR4

62.418

99.562

0.621
  radA Streptococcus mitis NCTC 12261

62.418

99.562

0.621
  radA Streptococcus mitis SK321

62.418

99.562

0.621