Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   H7R67_RS20105 Genome accession   NZ_AP022110
Coordinates   4269534..4270973 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP5-W18-ESBL-02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4264534..4275973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R67_RS20075 (WP5W18E02_39140) dagF 4264813..4265553 (+) 741 WP_182955617.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  H7R67_RS20080 (WP5W18E02_39150) - 4265657..4267561 (+) 1905 WP_182955620.1 BglG family transcription antiterminator -
  H7R67_RS20085 (WP5W18E02_39160) npr 4267577..4267849 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  H7R67_RS20090 (WP5W18E02_39170) rapZ 4267870..4268736 (-) 867 WP_010675869.1 RNase adapter RapZ -
  H7R67_RS20095 (WP5W18E02_39180) ptsN 4268777..4269223 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  H7R67_RS20100 (WP5W18E02_39190) hpf 4269226..4269513 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  H7R67_RS20105 (WP5W18E02_39200) rpoN/rpoN1 4269534..4270973 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  H7R67_RS20110 (WP5W18E02_39210) lptB 4271039..4271764 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  H7R67_RS20115 (WP5W18E02_39220) lptA 4271777..4272295 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  H7R67_RS20120 (WP5W18E02_39230) lptC 4272282..4272842 (-) 561 WP_182955624.1 LPS export ABC transporter periplasmic protein LptC -
  H7R67_RS20125 (WP5W18E02_39240) kdsC 4272839..4273393 (-) 555 WP_041214035.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  H7R67_RS20130 (WP5W18E02_39250) - 4273393..4274388 (-) 996 WP_042880205.1 KpsF/GutQ family sugar-phosphate isomerase -
  H7R67_RS20135 (WP5W18E02_39260) mlaF 4274595..4275395 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=76739 H7R67_RS20105 WP_039040474.1 4269534..4270973(-) (rpoN/rpoN1) [Aeromonas caviae strain WP5-W18-ESBL-02]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=76739 H7R67_RS20105 WP_039040474.1 4269534..4270973(-) (rpoN/rpoN1) [Aeromonas caviae strain WP5-W18-ESBL-02]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCGCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGCCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTTGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment