Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LL303_RS09555 Genome accession   NZ_CP126467
Coordinates   1882034..1882705 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain 303     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877034..1887705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL303_RS09530 (LL303_09505) pheA 1877339..1878178 (-) 840 WP_014570689.1 prephenate dehydratase -
  LL303_RS09535 (LL303_09510) - 1878180..1878668 (-) 489 WP_003132788.1 shikimate kinase -
  LL303_RS09540 (LL303_09515) aroA 1878692..1879984 (-) 1293 WP_003132786.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LL303_RS09545 (LL303_09520) - 1880105..1881169 (-) 1065 WP_095348235.1 prephenate dehydrogenase -
  LL303_RS09550 (LL303_09525) - 1881172..1882047 (-) 876 WP_003132784.1 HAMP domain-containing sensor histidine kinase -
  LL303_RS09555 (LL303_09530) braR 1882034..1882705 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  LL303_RS09560 (LL303_09535) - 1882708..1883772 (-) 1065 WP_095348234.1 VanZ family protein -
  LL303_RS09565 (LL303_09540) - 1883953..1885956 (-) 2004 WP_023164465.1 ABC transporter permease -
  LL303_RS09570 (LL303_09545) - 1885949..1886728 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  LL303_RS09575 (LL303_09550) - 1886743..1886886 (-) 144 WP_014570691.1 hypothetical protein -
  LL303_RS09580 (LL303_09555) - 1886917..1887276 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=767367 LL303_RS09555 WP_003132782.1 1882034..1882705(-) (braR) [Lactococcus lactis subsp. lactis strain 303]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=767367 LL303_RS09555 WP_003132782.1 1882034..1882705(-) (braR) [Lactococcus lactis subsp. lactis strain 303]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCGTTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTTACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413