Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O6R09_RS08565 Genome accession   NZ_CP114883
Coordinates   1687451..1688812 (-) Length   453 a.a.
NCBI ID   WP_167829313.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682451..1693812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS08540 (O6R09_08540) - 1683317..1683916 (-) 600 WP_206148156.1 NUDIX hydrolase -
  O6R09_RS08545 (O6R09_08545) gltX 1683933..1685390 (-) 1458 WP_168261160.1 glutamate--tRNA ligase -
  O6R09_RS08550 (O6R09_08550) - 1685499..1686215 (-) 717 WP_269725611.1 TIGR00266 family protein -
  O6R09_RS08555 (O6R09_08555) - 1686247..1686741 (-) 495 WP_269725612.1 LURP-one-related/scramblase family protein -
  O6R09_RS08560 (O6R09_08560) - 1686832..1687326 (-) 495 WP_269725613.1 beta-class carbonic anhydrase -
  O6R09_RS08565 (O6R09_08565) radA 1687451..1688812 (-) 1362 WP_167829313.1 DNA repair protein RadA Machinery gene
  O6R09_RS08570 (O6R09_08570) - 1688847..1689293 (-) 447 WP_168261164.1 dUTP diphosphatase -
  O6R09_RS08575 (O6R09_08575) - 1689308..1690075 (-) 768 WP_269725614.1 epoxyqueuosine reductase QueH -
  O6R09_RS08580 (O6R09_08580) - 1690275..1691291 (+) 1017 WP_269725615.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  O6R09_RS08585 (O6R09_08585) galU 1691341..1692258 (+) 918 WP_154455293.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  O6R09_RS08590 (O6R09_08590) - 1692303..1692971 (-) 669 WP_154455294.1 rhomboid family intramembrane serine protease -
  O6R09_RS08595 (O6R09_08595) - 1692968..1693498 (-) 531 WP_154455295.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49339.62 Da        Isoelectric Point: 6.0243

>NTDB_id=767350 O6R09_RS08565 WP_167829313.1 1687451..1688812(-) (radA) [Streptococcus alactolyticus strain LGM]
MAKKKTTFICQECGYHSPKYLGRCPNCGAWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYARTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDSDNAFYLYAETNMQAIRAQIE
QIQPDFLVIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEQPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDTIQVIGVTTVGDVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=767350 O6R09_RS08565 WP_167829313.1 1687451..1688812(-) (radA) [Streptococcus alactolyticus strain LGM]
ATCGCTAAGAAAAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCACTCTCCAAAATATTTGGGGCGTTGTCCCAACTG
TGGTGCTTGGACCTCATTTGTCGAAGAGGTAGAAGTCCAAGAGGTTAAAAATGCGCGTGTCAGTTTGACGGGTGAAAAGA
GTAAACCGACCAAGCTAAAAGACGTGAGCTCGATTCATTATGCTAGAACCAAGACGGAGATGGAGGAGTTTAACCGTGTG
CTTGGTGGTGGTGTCGTGCCAGGAAGTTTGGTGCTGATTGGTGGGGACCCTGGTATCGGAAAATCAACGCTTCTGTTGCA
GGTGTCTATTCAATTGGCTGATAAGGGCACTGTGCTCTACGTTTCTGGGGAAGAATCTGCCGAGCAGATTAAATTGCGTT
CGGAGCGTTTGGGCGATAGTGACAATGCCTTTTACCTCTACGCCGAAACCAATATGCAGGCTATTCGCGCACAGATTGAG
CAGATTCAGCCTGATTTCTTGGTGATTGATTCCATTCAAACCATCATGAGTCCTGATATTTCGGGGGTGCAAGGCTCGGT
GTCGCAGGTGCGTGAAGTAACAGCAGAACTCATGCAATTGGCTAAGACCAACAACATTGCCACCTTTATCGTGGGCCATG
TGACTAAGGAAGGACAGCTGGCCGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTTTTGTATTTTGAAGGGGAACGT
CACCATACTTTCCGTATTTTGCGGGCTGTGAAAAACCGTTTTGGTTCCACCAATGAAATCGGCATTTTTGAAATGCAGTC
AGGCGGTCTGGTTGAGGTACTCAATCCAAGCCAAGTTTTCCTCGAGGAACGCTTGGACGGAGCGACTGGTTCGGCTATCG
TGGTCACCATGGAAGGCAGCCGTCCCATTTTGGCGGAAGTGCAAGCCTTGGTTACACCGACTGTTTTTGGCAATGCCAAA
CGCACGACAACAGGGCTTGATTTTAACCGTGTGAGCTTGATTATGGCGGTGCTGGAAAAACGCTGTGGTCTGCTTTTGCA
AAATCAAGATGCCTATCTTAAATCAGCTGGTGGCGTCAAGTTGGACGAGCCTGCTATTGATTTGGCGGTCGCGGTTGCGA
TTGCCTCAAGTTACAAGGAACAACCAACCAATCCTCAAGAAGCCTTTATCGGTGAGATTGGCTTGACGGGTGAAATTCGC
CGTGTCACACGCATCGAGCAACGGATCAATGAAGCCGCAAAACTCGGATTTACCAAGGTTTACGCTCCTAAAAATTCCCT
TTCAGGAATTGACATTCCAGACACTATCCAAGTCATCGGCGTGACAACGGTCGGTGATGTGCTCAAAAAAGTCTTTGCAT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(65-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.079

100

0.881
  radA Streptococcus pneumoniae D39

88.079

100

0.881
  radA Streptococcus pneumoniae R6

88.079

100

0.881
  radA Streptococcus pneumoniae TIGR4

88.079

100

0.881
  radA Streptococcus mitis SK321

88.079

100

0.881
  radA Streptococcus mitis NCTC 12261

87.859

100

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625