Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   O6R09_RS01775 Genome accession   NZ_CP114883
Coordinates   311875..312600 (+) Length   241 a.a.
NCBI ID   WP_154455507.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   export ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 308285..318076 311875..312600 within 0


Gene organization within MGE regions


Location: 308285..318076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS01755 (O6R09_01755) - 308285..309238 (-) 954 WP_269725704.1 IS30 family transposase -
  O6R09_RS01760 (O6R09_01760) - 309629..310831 (-) 1203 WP_277998688.1 IS110 family transposase -
  O6R09_RS01765 (O6R09_01765) - 311081..311395 (-) 315 WP_154455509.1 hypothetical protein -
  O6R09_RS01770 (O6R09_01770) - 311392..311811 (-) 420 WP_269725705.1 HIT family protein -
  O6R09_RS01775 (O6R09_01775) pptA 311875..312600 (+) 726 WP_154455507.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS01780 (O6R09_01780) - 312603..313637 (+) 1035 WP_154455506.1 ABC transporter permease -
  O6R09_RS01785 (O6R09_01785) ccrZ 313695..314492 (+) 798 WP_167829333.1 cell cycle regulator CcrZ -
  O6R09_RS01790 (O6R09_01790) trmB 314489..315124 (+) 636 WP_154455505.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  O6R09_RS01795 (O6R09_01795) - 315517..316773 (-) 1257 WP_269725706.1 ISL3 family transposase -
  O6R09_RS01800 (O6R09_01800) - 316898..318076 (-) 1179 Protein_296 ISL3 family transposase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26799.20 Da        Isoelectric Point: 4.7741

>NTDB_id=767317 O6R09_RS01775 WP_154455507.1 311875..312600(+) (pptA) [Streptococcus alactolyticus strain LGM]
MLKLENITGGYVNIPVLKNVSFEVVKGELVGLIGLNGAGKSTTINEIIGLLTPYQGEISLDGLTLEKDASAYRQKIGFIP
ETPSLYEELTLREHLETVAMAYDLDYDKAMARAMDLLELFRLSDKLDWFPIHFSKGMKQKVMIVCAFMIDPSLFIVDEPF
LGLDPLAISHLTELLDQEKAKGKAILMSTHVLDAAEKMCDRFVILHQGQVRATGTLADLRQQFGKENASLTDIYMALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=767317 O6R09_RS01775 WP_154455507.1 311875..312600(+) (pptA) [Streptococcus alactolyticus strain LGM]
ATGTTAAAATTGGAAAATATAACTGGGGGATATGTTAATATCCCTGTTTTAAAAAATGTGTCTTTTGAGGTTGTAAAGGG
TGAGTTGGTTGGGCTCATCGGGCTAAATGGTGCGGGAAAATCCACCACTATCAATGAAATTATTGGTTTATTGACGCCTT
ATCAAGGGGAAATTTCGCTGGATGGTTTGACCTTGGAAAAAGACGCTTCGGCATATCGCCAAAAAATTGGTTTTATTCCT
GAAACGCCAAGCTTGTATGAAGAATTGACCCTGCGTGAGCATTTGGAAACGGTGGCTATGGCTTATGATTTGGATTATGA
TAAGGCCATGGCGCGTGCGATGGACTTGCTTGAGCTTTTTCGCTTGTCAGACAAATTGGACTGGTTTCCTATTCATTTTT
CAAAAGGGATGAAGCAAAAGGTGATGATTGTTTGTGCGTTCATGATTGACCCAAGCTTATTTATCGTGGATGAGCCTTTC
TTGGGCTTGGACCCCCTAGCGATTTCACATTTAACGGAATTATTGGACCAAGAAAAAGCAAAGGGCAAGGCTATCTTGAT
GTCAACTCACGTGCTAGATGCGGCTGAAAAAATGTGTGACCGTTTTGTCATTTTACATCAAGGTCAGGTGCGTGCAACAG
GAACATTGGCAGATTTGCGCCAGCAATTTGGCAAGGAAAACGCTAGTTTGACGGATATTTACATGGCTTTAACTAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

77.824

99.17

0.772
  pptA Streptococcus thermophilus LMD-9

76.569

99.17

0.759