Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   O6R09_RS01580 Genome accession   NZ_CP114883
Coordinates   275106..276152 (+) Length   348 a.a.
NCBI ID   WP_235280784.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270106..281152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS01565 (O6R09_01565) - 271372..273027 (+) 1656 WP_154455415.1 peptide ABC transporter substrate-binding protein -
  O6R09_RS01570 (O6R09_01570) - 273139..274053 (+) 915 WP_154455414.1 ABC transporter permease -
  O6R09_RS01575 (O6R09_01575) - 274064..275095 (+) 1032 WP_168261390.1 ABC transporter permease -
  O6R09_RS01580 (O6R09_01580) oppD 275106..276152 (+) 1047 WP_235280784.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS01585 (O6R09_01585) - 276152..277083 (+) 932 Protein_258 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38676.41 Da        Isoelectric Point: 5.1632

>NTDB_id=767315 O6R09_RS01580 WP_235280784.1 275106..276152(+) (oppD) [Streptococcus alactolyticus strain LGM]
MSEETILQVKNLRVDFHTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSAPNANITGAIDFMGKKLLDL
KEDEWTKVRGNEIAMIFQDPMTSLDPTMRIGQQIAEPIMIHEKVSKQEALKRALELMKSVGIPKAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILSLMKKIQKERNSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPLFKVSDTHYAATWLL
DERSPKVEPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=767315 O6R09_RS01580 WP_235280784.1 275106..276152(+) (oppD) [Streptococcus alactolyticus strain LGM]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCGAGTAGATTTTCACACCTATGCTGGAGAAATTAAAGCGATTCG
CGATGTCAATTTTGACCTTAAAAAAGGGGAAACCCTTGCTATCGTAGGTGAATCAGGTTCAGGTAAATCTGTAACAACTA
AAACATTGATGGGCTTGTCAGCTCCTAATGCGAACATTACAGGTGCTATTGACTTTATGGGCAAAAAATTGCTTGACCTT
AAAGAAGACGAATGGACTAAAGTTCGTGGGAATGAAATTGCCATGATCTTCCAAGATCCAATGACCAGTCTTGACCCAAC
TATGCGAATTGGTCAACAAATCGCTGAACCAATTATGATTCACGAAAAAGTATCAAAACAAGAAGCTCTCAAACGTGCTT
TGGAATTGATGAAAAGTGTAGGTATTCCAAAAGCTGAAGAACATATCAATGATTACCCACACCAATGGTCAGGGGGAATG
CGTCAACGTGCCGTTATCGCTATTGCCCTAGCAGCCAACCCAGATGTTTTGATTGCCGACGAACCAACAACAGCCCTAGA
CGTAACGATCCAAGCCCAAATTTTGAGCTTGATGAAGAAAATTCAAAAAGAACGTAATTCATCAATTGTCTTTATTACCC
ACGACTTAGGTGTTGTTGCTGGTATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAAATCATTGAGTATGGAACAGTA
GATGAAGTTTTCTACAATCCACAACACCCATACACTTGGGGATTGTTGAATTCTATGCCAACAACAGACACAGAAGCAGG
TAGCCTTCAATCTATTCCTGGAACACCACCAGATCTTCTTAATCCTCCAAAAGGGGATGCCTTTGCACCACGTAATGAAT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCACTCTTTAAAGTGAGTGATACGCATTACGCTGCAACATGGCTATTA
GATGAACGCTCGCCTAAAGTAGAACCACCATTGCCAATTCAAAAACGTTGGGCGAAATGGAAAGAGCTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.827

99.713

0.796
  amiE Streptococcus salivarius strain HSISS4

57.612

96.264

0.555
  amiE Streptococcus thermophilus LMG 18311

57.015

96.264

0.549
  amiE Streptococcus thermophilus LMD-9

57.015

96.264

0.549