Detailed information NTG0767256

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QN227_RS05145
• Genome accession: NZ_CP126348
• Coordinates: 1066525..1067517 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NN5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1061525..1072517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN227_RS05115 (QN227_05115)	ispD	1061634..1062344 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QN227_RS05120 (QN227_05120)	ispF	1062344..1062823 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QN227_RS05125 (QN227_05125)	truD	1062820..1063869 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QN227_RS05130 (QN227_05130)	surE	1063850..1064611 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QN227_RS05135 (QN227_05135)	pcm	1064605..1065231 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QN227_RS05140 (QN227_05140)	nlpD	1065416..1066462 (+)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
QN227_RS05145 (QN227_05145)	rpoS	1066525..1067517 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QN227_RS05150 (QN227_05150)	-	1067638..1068045 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
QN227_RS05155 (QN227_05155)	-	1068192..1068785 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QN227_RS05160 (QN227_05160)	-	1068785..1070212 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QN227_RS05165 (QN227_05165)	-	1070223..1070459 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QN227_RS05170 (QN227_05170)	ygbN	1070498..1071862 (-)	1365	WP_033557646.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=767256 QN227_RS05145 WP_000081550.1 1066525..1067517(+) (rpoS) [Escherichia coli strain NN5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=767256 QN227_RS05145 WP_000081550.1 1066525..1067517(+) (rpoS) [Escherichia coli strain NN5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715