Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O5O48_RS01035 Genome accession   NZ_CP114836
Coordinates   226471..227841 (-) Length   456 a.a.
NCBI ID   WP_088277791.1    Uniprot ID   A0AAQ1GA30
Organism   Halopseudomonas sp. MFKK-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 221471..232841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O5O48_RS01020 ettA 222651..224315 (+) 1665 WP_233049115.1 energy-dependent translational throttle protein EttA -
  O5O48_RS01025 gdhA 224515..225852 (+) 1338 WP_269687904.1 NADP-specific glutamate dehydrogenase -
  O5O48_RS01030 - 225910..226266 (+) 357 WP_228245838.1 PilZ domain-containing protein -
  O5O48_RS01035 radA 226471..227841 (-) 1371 WP_088277791.1 DNA repair protein RadA Machinery gene
  O5O48_RS01040 - 227940..228710 (+) 771 WP_269687905.1 EAL domain-containing protein -
  O5O48_RS01045 pap 228703..230154 (+) 1452 WP_269687906.1 polyphosphate:AMP phosphotransferase -
  O5O48_RS01050 mscL 230223..230633 (+) 411 WP_088277787.1 large-conductance mechanosensitive channel protein MscL -
  O5O48_RS01055 - 230713..231837 (+) 1125 WP_269687907.1 methyltransferase -
  O5O48_RS01060 - 231844..231978 (-) 135 WP_088277840.1 DUF2256 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48909.37 Da        Isoelectric Point: 7.3285

>NTDB_id=767213 O5O48_RS01035 WP_088277791.1 226471..227841(-) (radA) [Halopseudomonas sp. MFKK-1]
MAKQKRIYGCTECGATFSKWAGQCPECQAWNSMVETVVDTTPTGGSPSRSSNWTGQQASVKTLAEVTTEEMPRQPSGSSE
LDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTLCRLAQGMPALYVTGEESQQQVAMRARRLGLPEDQLKVMTETCIESIV
ATARQEQPRVMVVDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGEADGRYRMLRAVKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRYDAPIPGSVVMATWEGSRPMLVEVQALVDTSHL
GNPRRVTLGLDQNRLAMLLAVLHRHGGVATYDQDVFVNVVGGVKVLETAADLALLAAVMSSLRNRPLPMDLMVFGELGLS
GEIRPVPSGQERLKEAAKHGFTRAIVPKANAPKEAPKGMQVIAVTRLDQALAAIFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=767213 O5O48_RS01035 WP_088277791.1 226471..227841(-) (radA) [Halopseudomonas sp. MFKK-1]
ATGGCCAAACAGAAACGTATTTACGGCTGCACCGAATGCGGTGCCACCTTTTCCAAGTGGGCGGGCCAATGCCCGGAATG
CCAGGCGTGGAACAGCATGGTGGAGACTGTGGTGGACACCACGCCTACCGGTGGCAGCCCCTCACGCAGCAGCAACTGGA
CCGGGCAGCAGGCGTCAGTCAAGACGCTGGCAGAGGTCACTACAGAAGAAATGCCGCGTCAGCCCAGCGGCTCGTCCGAG
CTTGATCGGGTGCTGGGTGGCGGCCTGGTCGCCGGGTCGGTGGTGCTGATCGGCGGCGATCCCGGGATCGGCAAATCGAC
CATTCTGCTACAGACCCTCTGCCGCCTGGCGCAGGGCATGCCCGCGCTGTATGTAACGGGTGAGGAGTCCCAGCAGCAGG
TGGCCATGCGCGCTCGCCGGCTCGGCCTGCCGGAAGATCAGCTCAAGGTGATGACCGAGACCTGTATCGAGAGCATTGTT
GCGACGGCGCGGCAGGAACAGCCCCGGGTTATGGTGGTTGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGC
CCCGGGCGGTGTTGCCCAGGTACGCGAGAGCGCGGCCTTGCTGGTGCGATACGCCAAGCAGAGTGGCACGGCAATTTTTC
TGGTCGGCCACGTTACCAAGGAAGGCTCGCTGGCCGGGCCGCGGGTGCTTGAGCACATGGTGGACACGGTGCTGTATTTC
GAGGGTGAGGCTGATGGTCGTTACCGCATGCTGCGGGCGGTGAAGAACCGTTTTGGTGCGGTAAACGAGCTGGGTGTGTT
TGCCATGACCGACAAGGGTCTTAAGGAAGTGGCCAACCCCTCTGCGATTTTCCTCTCACGTTATGACGCGCCGATTCCCG
GCAGCGTGGTGATGGCTACCTGGGAAGGCTCGCGCCCGATGCTGGTGGAGGTGCAGGCGCTGGTGGATACCAGCCATCTG
GGCAATCCGCGTCGGGTCACGCTGGGGCTGGATCAGAACCGGTTGGCGATGCTGCTGGCCGTGTTGCACCGCCATGGCGG
CGTTGCGACCTATGACCAGGATGTCTTCGTCAACGTCGTCGGTGGCGTCAAGGTACTGGAAACGGCAGCCGATCTGGCGC
TGCTGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCGCTGCCGATGGATCTGATGGTATTTGGTGAGCTGGGGCTGTCA
GGTGAGATTCGCCCGGTGCCGAGCGGGCAGGAGCGCCTGAAGGAAGCCGCCAAGCATGGCTTTACCCGCGCCATCGTACC
CAAGGCCAACGCGCCCAAGGAAGCGCCCAAAGGAATGCAGGTGATTGCCGTGACCCGGTTGGATCAGGCGCTTGCGGCGA
TATTTGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-430)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.781

0.493
  radA Streptococcus pneumoniae Rx1

47.368

100

0.474
  radA Streptococcus pneumoniae D39

47.368

100

0.474
  radA Streptococcus pneumoniae R6

47.368

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.474
  radA Streptococcus mitis NCTC 12261

47.149

100

0.471
  radA Streptococcus mitis SK321

47.149

100

0.471