Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6D90_RS14800 Genome accession   NZ_CP114801
Coordinates   3023133..3023747 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. 21OH12SH02A-Citro     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3018133..3028747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6D90_RS14785 (O6D90_14785) helD 3018357..3020411 (-) 2055 WP_016156138.1 DNA helicase IV -
  O6D90_RS14790 (O6D90_14790) - 3020537..3020983 (+) 447 WP_016152485.1 YccF domain-containing protein -
  O6D90_RS14795 (O6D90_14795) yccS 3021002..3023155 (+) 2154 WP_016152484.1 YccS family putative transporter -
  O6D90_RS14800 (O6D90_14800) sxy/tfoX 3023133..3023747 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  O6D90_RS14805 (O6D90_14805) sulA 3023964..3024473 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  O6D90_RS14810 (O6D90_14810) ompA 3024831..3025889 (+) 1059 WP_016156137.1 porin OmpA -
  O6D90_RS14815 (O6D90_14815) matP 3025988..3026440 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  O6D90_RS14820 (O6D90_14820) - 3026626..3028386 (+) 1761 WP_271143125.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=767201 O6D90_RS14800 WP_016152483.1 3023133..3023747(-) (sxy/tfoX) [Citrobacter sp. 21OH12SH02A-Citro]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=767201 O6D90_RS14800 WP_016152483.1 3023133..3023747(-) (sxy/tfoX) [Citrobacter sp. 21OH12SH02A-Citro]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681