Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6936_RS12300 Genome accession   NZ_CP114792
Coordinates   2500359..2500988 (+) Length   209 a.a.
NCBI ID   WP_000839130.1    Uniprot ID   -
Organism   Escherichia coli strain T2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2495359..2505988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6936_RS12280 (O6936_12270) ycbZ 2495760..2497520 (-) 1761 WP_309267083.1 Lon protease family protein -
  O6936_RS12285 (O6936_12275) matP 2497706..2498158 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6936_RS12290 (O6936_12280) ompA 2498234..2499274 (-) 1041 WP_001400178.1 porin OmpA -
  O6936_RS12295 (O6936_12285) sulA 2499631..2500140 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  O6936_RS12300 (O6936_12290) sxy/tfoX 2500359..2500988 (+) 630 WP_000839130.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6936_RS12305 (O6936_12295) yccS 2500951..2503113 (-) 2163 WP_000875061.1 YccS family putative transporter -
  O6936_RS12310 (O6936_12300) yccF 2503123..2503569 (-) 447 WP_001261235.1 YccF domain-containing protein -
  O6936_RS12315 (O6936_12305) helD 2503692..2505746 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=767136 O6936_RS12300 WP_000839130.1 2500359..2500988(+) (sxy/tfoX) [Escherichia coli strain T2]
MKSLSYKRIYKLQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767136 O6936_RS12300 WP_000839130.1 2500359..2500988(+) (sxy/tfoX) [Escherichia coli strain T2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATTACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995