Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QN080_RS06890 Genome accession   NZ_CP126309
Coordinates   1608083..1608946 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain LyEC01     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603083..1613946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN080_RS06865 - 1603342..1604559 (-) 1218 WP_284184432.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  QN080_RS06870 - 1604562..1606517 (-) 1956 WP_021665499.1 LptF/LptG family permease -
  QN080_RS06875 rplI 1606793..1607332 (-) 540 WP_004585134.1 50S ribosomal protein L9 -
  QN080_RS06880 rpsR 1607357..1607629 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  QN080_RS06885 rpsF 1607633..1607986 (-) 354 WP_004585132.1 30S ribosomal protein S6 -
  QN080_RS06890 rpoS 1608083..1608946 (-) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  QN080_RS06895 - 1609136..1610632 (-) 1497 WP_004585130.1 DegQ family serine endoprotease -
  QN080_RS06900 - 1610849..1611106 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  QN080_RS06905 guaA 1611828..1613348 (+) 1521 WP_099780292.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=767062 QN080_RS06890 WP_004585131.1 1608083..1608946(-) (rpoS) [Porphyromonas gingivalis strain LyEC01]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=767062 QN080_RS06890 WP_004585131.1 1608083..1608946(-) (rpoS) [Porphyromonas gingivalis strain LyEC01]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAATCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCTCTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATTGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTAGATGCTCCTTTTGT
AGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAAGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGATATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366